KEGG   Dehalococcoides sp. UCH007: UCH007_10470
Entry
UCH007_10470      CDS       T03880                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
duc  Dehalococcoides sp. UCH007
Pathway
duc03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:duc00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    UCH007_10470 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:duc03400]
    UCH007_10470 (mfd)
Enzymes [BR:duc01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     UCH007_10470 (mfd)
DNA repair and recombination proteins [BR:duc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      UCH007_10470 (mfd)
SSDB
Motif
Pfam: DEAD UvrB_inter TRCF Helicase_C CarD_TRCF_RID ResIII UB2H AAA_22 AAA_16 AroM RecG_dom3_C
Other DBs
NCBI-ProteinID: BAQ35005
UniProt: A0A0C6EJL2
Position
complement(1020920..1024366)
AA seq 1148 aa
MNLSGLLPLIDQSPSFDSLFQALDRGEADISVLDAGRGFSLASVYRRLKCPMLVITSQPE
RARELLEQIAAYTGEEPGFLPDPSLLPYQRAVSDRNSSLEKMRLAGILGGYIRSGDSRII
VTAVPALLQRYVSPEIFKQSFIQVWAGLEIEPQDLISRFQQLGYRQESIVEIPGTYSHRG
GILDIFPHTEDNPVRLEFFGNTLESLRNFDPKSQRSGKAVNELTISPASELFHLGQLTRK
DINNRLDILLTDNLNPEFSRTLSADINHLNEGLKPEYPEFFAPLFNTSSILDYLPSNALV
VLDEPASIEQAAFHLDKEAEELRSDRLSHGELPSVYPRPYFNWAEISAMLKTRKRLIMAS
FGRESESLKLDFTSPDNYVGRLSALYEKLPELKGHTGRVVIVSHQAARLAELLKERSILA
VVQTDVLTPPPPASLSLVQGILGSGWSLSGNLHILTDAELFGFVKQRRLPSKRPSARKGV
VLDIKPGEFVVHIDHGVALFSGVSHMNRDGMDKEYLILQYAGGDKLYVPTDQMDRVNRFI
GSGDEPPSLHRLGTQEWQRAKEKASESAEETARELLDIYAKRELANGYAFSSDTVWQQEM
EASFPYVETPDQLKALCDIKEDMEKTRPMDRLILGDVGYGKTEVAIRAAFKAVMDGKQVA
VLVPTTVLAQQHYTTFRERLATFPVKVEVLSRFRSQSEQKEVVENMEKGEVDICIGTHRL
LQADIKFKDLGLVIIDEEQRFGVAHKEFFKKLRAQVDVLTLSATPIPRTLHMSMVGVRDM
SVIETPPGERLPIKTVVAAFDERLIREAILREMERNGQVFFVSNRVMGINLLAERIQKLV
PEARIGIGHGQMAEDKLAAVMADFVRHELDVLVCTTIIESGVDVPNANTLIINRADRFGL
TQLYQLRGRVGRSSQLAYAYFLYDKEKHLSGDAEKRLKTIYEAAELGAGYGIAMKDLEIR
GAGTLLGVKQSGYINSVGFNLYTQMLSEAVAGLKAAGSGLSKEEIRIQNMPAPKLDLPLD
AFIPEYYIQDLDLRLSIYQQLSTLASLAGVLEKEKELTDRFGVMPKELENLLYSFRLRLL
AKKAHVETIVTEGSQIVVRMLGGLIINKALLEPLRAGVVAGRNQVAIQFRKTGDSWKEVL
EEIIWRLG
NT seq 3447 nt   +upstreamnt  +downstreamnt
ttgaatcttagcggtttgttgcctcttatagaccaaagcccgtcatttgacagcctgttt
caagctctggataggggtgaagctgacatttcggttttagatgcggggcgtgggtttagt
ctggcatccgtataccgcaggctaaaatgccccatgctggttattacctcgcaaccggag
cgggcaagggaacttttagagcagatagctgcttatacaggagaggagccgggttttctg
cctgacccaagtctgctgccttatcagcgagctgtttctgaccgtaattcttcactggaa
aagatgcggctggcaggcattctgggcgggtatatccgcagcggagattcacggataata
gttacggctgtgccggctttgctacagcggtacgtttctccggaaatatttaaacaatct
tttatacaagtctgggccgggttggaaatagaaccccaggacttaatcagccgttttcag
cagttgggataccgccaggaaagcatagtggagataccgggtacatattcccatcggggc
ggcatattggatatttttcctcataccgaagataatccggtaagactggaatttttcggt
aatactctggaaagtctgcgtaattttgatcccaagagccagcgttcgggaaaagcggta
aatgagcttactataagccccgcaagtgagctttttcatctggggcagctgacccgtaag
gacattaataaccggctggatattttgctcacagataatctaaatcccgaattcagccgt
actctgtcagcagatataaaccatcttaacgagggcctgaaacccgaataccccgaattt
ttcgctcctctttttaatacctcaagcatacttgattaccttccgtcaaatgctctggta
gtgctggatgaacctgcctccatagagcaggcagcttttcatctggataaagaagccgaa
gaactgcgctctgatcgtctgtcacatggtgaacttccttccgtctatccccgtccgtat
tttaactgggcagagatatccgccatgctgaaaaccagaaaacggcttattatggcctcc
ttcgggcgggagagtgagtctttaaagctggattttacttccccggataattatgtaggg
cgtttatccgctttgtatgaaaaattgccggaactaaaagggcacactggcagagtggtt
attgtcagtcatcaggccgcccgtctagctgagcttttaaaagagcgcagtattttggcg
gttgtccagacagatgtattaaccccccctccgcctgccagtctcagtctggttcaaggg
atattgggttccggctggagtttaagcggtaacttgcatattctcacggatgccgaactt
ttcggctttgtaaaacagcggcgtctgccttccaagcgtccgtctgcccgtaagggtgtg
gtgctggatataaaaccgggtgaatttgtggtgcatatagaccatggtgtggctttgttc
agcggggtcagccatatgaaccgtgatggtatggataaagagtacctgatactccagtat
gccggcggtgacaaactttatgtgccgacagatcaaatggacagagtaaaccgttttata
ggcagcggagatgaaccgccgtctttgcaccgcttgggtactcaggaatggcaaagggca
aaagaaaaggccagtgaatccgcggaggaaaccgcccgcgaactccttgatatctatgcc
aaacgcgagttggcaaatggctatgcattttcgtcagatactgtctggcagcaagaaatg
gaggcatcatttccgtatgtggaaactcctgaccagctgaaagctctgtgcgatatcaaa
gaagatatggaaaaaacccgccctatggacaggcttatactgggggacgttggctacggt
aaaacagaagtagctatacgggcagctttcaaggcggtcatggacggcaagcaggtggca
gtgttggtacctactacagtgcttgcccagcagcattacactactttccgtgagcggctg
gctacttttccggtcaaagtagaggtgcttagccgttttcgcagccagtccgaacagaaa
gaagtggttgaaaatatggaaaaaggcgaagtggatatctgcataggtactcaccgcctg
cttcaggcagatataaagtttaaagatttgggactggtaattatagacgaagagcaacgc
ttcggggtagcgcacaaggaatttttcaagaaactgcgtgcccaagtagatgtgcttacc
cttagtgcaacacccattccccgtactttgcatatgtctatggttggggtaagggatatg
agtgttatagaaactccgcccggtgaacgcctgcctattaaaaccgtagtagctgctttt
gatgaacggctgatacgtgaagctatattgcgggagatggaaaggaacgggcaggtattt
ttcgtgagtaaccgggtaatgggcataaatttacttgcagagcgtattcagaagcttgtc
cccgaagcccgtataggtatcgggcacgggcagatggctgaagataagctagccgccgta
atggctgattttgtgcggcatgaactggacgtgctggtatgtactactattatagaatcc
ggagtggatgtgccgaatgccaatactctgattataaacagggcagaccgctttgggctt
acccagctttaccagctgcgggggcgggtggggcggagctcccagctggcatatgcctat
ttcctgtatgacaaagaaaaacacttaagcggtgatgctgaaaaacgcctgaaaactatt
tatgaagcagctgaacttggggcaggatatggtattgccatgaaagatttggaaataagg
ggtgcgggaacactgcttggcgtaaaacaatcaggttatataaattcggtcggtttcaac
ctatacactcagatgctgtcagaagcagtagccggactgaaagctgccggaagcgggctt
tccaaagaagaaatacgcatccagaatatgcctgcccccaagctggatttacccttggac
gcatttatacccgaatactatatccaggatctggatttacgtttgtctatttaccagcaa
ttatcaactctggccagtctggcaggcgttctggaaaaggaaaaagaactgacagaccgg
ttcggggtaatgccaaaggaacttgaaaatctgctatattcattccgtttacgtttgctg
gctaaaaaagcccacgtggaaactatcgtaaccgaaggcagtcagatagtagtgcggatg
ctgggcgggctgataataaataaagctttgcttgaaccgcttagagcgggagtggtggca
gggcgtaatcaggtggctatccagttcagaaagactggcgatagttggaaagaagtgtta
gaagagattatctggcggctggggtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

Download RDF
DBGET integrated database retrieval system