KEGG   Nitratidesulfovibrio vulgaris RCH1: Deval_0180
Entry
Deval_0180        CDS       T02064                                 
Name
(GenBank) UvrD/REP helicase
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
dvg  Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03420  Nucleotide excision repair
dvg03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:dvg00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Deval_0180
   03430 Mismatch repair
    Deval_0180
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dvg03400]
    Deval_0180
Enzymes [BR:dvg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Deval_0180
DNA repair and recombination proteins [BR:dvg03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Deval_0180
   MMR (mismatch excision repair)
    Other MMR factors
     Deval_0180
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 AAA_30 Viral_helicase1 DEAD AAA_12 PAH AAA_11
Other DBs
NCBI-ProteinID: ADP85351
Position
234193..236352
AA seq 719 aa
MIEFAKELNAAQYEAVTTLDGPVLVIAGAGSGKTRTVVYRLANLLERGVPASSILLLTFT
RKAANEMLQRASRLLGYGVQGIAGGTFHAFAYSLLRQYHPARLEGRDLTIMDGADSVAAI
QHCKDALGIARGDKSFPKTQTVLSLLSKSRNKELPLDEVLRREAYHLLVHADGVSRIGEA
YAEYRAEHGLLDYDDLLFEVERLLRERPDLLAHLRDRYRYIMVDEYQDTNLVQARLVQLL
AGEGGNVMAVGDDAQSIYAFRGANVQNILSFPQFFPGTRIIKLEENYRSTQPVLDLTNAI
LAEAPQAYRKHLYTSREDGVLPQVVRPLSDLTQASIVVSRVSELLRTYPPHEIAVLFRAG
FHSYHVEVQLNKLGIRFRKYGGVRYSEAAHVKDVMAYARLVLNPLDLPAFQRVAALSRGV
GPKTTLRLYEVARQGDPAATAHACARYPQLRADLELLDRLRKRTPAPATLLEEVIEHYQP
RLEAAYPDDWPRRQQGLEQLVQIASAYRDLDLFISDLSLEDPGTEEEDRDSVVLSTIHSA
KGLEWSAVIILDLVEDRFPSRHAVTRADDFEEERRLMYVACTRARERLMLFVPSSLYQRG
EGGNQPAAPSPFVRELPAALYEEWYESYTGGLQRRDTSRPVARPAVASTFGCAPRPESAP
VPGGPSPVAGAAKLGFCTHKIFGRGKIVQHLPPDKYRVNFPGVGLKVILGDYLTLEDDA
NT seq 2160 nt   +upstreamnt  +downstreamnt
atgatagaattcgccaaagaactcaacgcggcccagtatgaggccgtgaccacgctcgac
ggcccggtgctggtcatcgccggtgcgggcagcggcaagacgcgcacggtggtctaccgc
ctcgccaacctgcttgagcgcggcgtgcccgcctcgtccatcctgctgctgacgttcacc
cgcaaggcggccaacgagatgctgcaacgcgccagccgcctgctgggctacggggtgcag
ggcatcgccgggggcaccttccacgccttcgcctattcgctcttgcgccagtaccatccg
gcacgccttgaggggcgcgacctgaccatcatggacggggccgacagcgtggccgccatc
cagcactgcaaggatgcgctcggcatcgcgcggggggacaagtcgttccccaagacacag
acggtgctgtcgttgctcagcaagtcgcgcaacaaggaactgccgctggacgaagtgctg
cgccgcgaggcgtaccacctgctggtacatgcagacggggtctcgcgcatcggcgaagcc
tacgccgaatatcgcgcggaacacggcctgctggactatgacgacctgctcttcgaggtg
gagcgcctgttgcgcgaacggcccgacctgctggcccacctgcgcgacagataccgctac
atcatggtcgacgagtatcaggacaccaacctcgtgcaggcgcggctggtgcagcttctg
gcgggagagggcggcaacgtcatggccgtgggggacgacgcccagtccatctacgccttt
cgcggcgccaacgtgcagaacatcctgtcgttcccgcagttctttcccggtacgcgcatc
atcaagctggaagagaactaccgttccacccagccggtgctcgacctcaccaacgccatc
ctcgccgaggcaccgcaggcctaccgcaagcacctgtacaccagtcgcgaggacggcgtg
ctgccgcaggtggtgcgacccctgagcgacctcacgcaggcatccatcgtggtgagtcgc
gtgagtgaactgctgcggacgtatccgccccatgaaatcgccgtgctgttccgggcgggg
ttccactcgtaccatgtggaggtacagctcaacaaactgggcatccgcttccgcaagtat
ggcggggtgcgctattccgaggccgcgcacgtcaaggacgtgatggcctacgcccgcctt
gtgctcaaccccctcgacctgccggcgttccagcgtgtggcggccctgtcgcgcggtgtg
gggcccaagaccaccctgcgcctctacgaggtcgcccgacagggtgacccggcggcgacg
gcccatgcctgcgcgcgttatccgcaactgcgggccgaccttgaactgctcgacaggctt
cgcaagcgcacacctgcgcccgccacgctgctggaagaggtcatcgagcattaccagccg
cgtctcgaagccgcctaccccgacgactggccgcgcagacagcagggacttgaacagctt
gtgcagatagcctcggcctatcgcgacctcgacctcttcatctccgacctgtcgctggaa
gaccccggcaccgaggaggaggaccgcgacagcgtggtgctgtccaccatccattccgcc
aaggggcttgagtggagtgccgtcatcatcctcgacctcgtggaggacaggttcccgtcg
cgccatgccgtgacgcgcgccgacgacttcgaggaggagcgccgcctgatgtacgtggcc
tgcacccgcgcccgcgaacggctcatgctcttcgtgccgtccagcctctaccagcgcggg
gagggtggcaaccagcccgccgcgcccagccccttcgtccgggagttgcccgcggcactg
tacgaggagtggtacgagagctataccggaggtctgcaacggcgtgatacgtcgcgtccg
gttgcgcgtccggccgtggcatccaccttcggttgcgcaccgcgtcccgaatcggcaccg
gtgcccggcgggccgtcgcccgttgcaggggcggcgaagctggggttctgcacgcacaag
atcttcgggcggggcaagatcgtccagcatctgccgcccgacaagtacagggtgaacttc
cccggcgtggggctcaaggtcatcctgggcgactatctgacgctggaggatgacgcatga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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