KEGG   Nitratidesulfovibrio vulgaris RCH1: Deval_3059
Entry
Deval_3059        CDS       T02064                                 
Name
(GenBank) DEAD/DEAH box helicase domain protein
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
dvg  Nitratidesulfovibrio vulgaris RCH1
Pathway
dvg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:dvg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Deval_3059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:dvg03019]
    Deval_3059
   03009 Ribosome biogenesis [BR:dvg03009]
    Deval_3059
Enzymes [BR:dvg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     Deval_3059
Messenger RNA biogenesis [BR:dvg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Deval_3059
Ribosome biogenesis [BR:dvg03009]
 Prokaryotic type
  rRNA helicases
   Deval_3059
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII DNA_pol3_gamma3 DUF240
Other DBs
NCBI-ProteinID: ADP88200
Position
3489740..3491338
AA seq 532 aa
MESVESFKDLPLEEELLKAIEELGFTEPSPIQSIAIPRLLEGRDVIGQAQTGTGKTAAFG
LPLLQRIDAADRSVQALVLCPTRELALQVANGLTALAKHLRGVRILSVYGGQPIEPQASA
LRRGAQVVVGTPGRILDHINRGTLQLGVVRMTVLDEADEMLDMGFREDIERILSEMPEWV
QSAFFSATMPDGILELARRFLREPELLRVTRRQLTVANTEQAWFEVRPFRRVDAVCRIFD
AYIPRKAIVFRATKQGVDELAAALQQRGILADALHGDLNQTQRERVMSRFRAGGISVLVA
TDVAARGLDVDDVDTVINFDLPNDPETYVHRIGRTGRAGRTGRAFSFAAGRDVYKLRDIQ
RVTGSRIDRRAMPTAADASRARTGQLLEEVAAGLASAETSACLPVVEKLIAEGADPTQLA
ATLLRMIMQRDRIDLPGARQTDDIGTGRVRLFFNVGRRMRITPRDLVGAIAGETGISGRS
IGSIEIHDRFSFVEVDASIAPEVVSVMHGNQIRGFRLAVEQASPREGQDRAA
NT seq 1599 nt   +upstreamnt  +downstreamnt
atggaatccgtagaatcgttcaaggacctccccctcgaagaggaactgctcaaggccatc
gaagaactcggcttcaccgagccctcgcccatccagtccatcgccatcccccgcctgctt
gaaggccgcgacgtgataggtcaggcccagaccggcaccggcaagaccgccgccttcggt
ctgcccctgcttcagcgcatcgacgccgccgaccgctcggtacaggccctcgtgctctgt
cccacccgtgaactggccctgcaggtggccaatggcctcaccgccctcgccaagcatctg
cgcggggtacgcatcctctccgtgtacggcggccagcccatcgaaccgcaggcctccgcc
ctgcgccgtggcgcacaggtcgtcgtgggtacgcccgggcgcatcctcgaccatatcaac
cgcggcaccctgcaactcggcgtcgtgcgcatgaccgtgctcgacgaagccgacgaaatg
ctcgacatgggctttcgcgaggacatcgaacgcatcctcagcgaaatgcccgaatgggtg
cagtctgcgttcttctccgccaccatgcccgacggcatcctcgaactcgcccgccgcttc
ctgcgcgaacccgagttgctgcgcgtgacgcgccgccagcttaccgtcgccaatacggaa
caggcatggttcgaagtgcggcccttccgccgcgtggacgccgtatgccgaattttcgac
gcctacattccgcgcaaggccatcgtcttccgcgccaccaagcagggcgtcgatgaactg
gccgccgcactccagcagcgcggcatcctcgccgacgccctgcacggcgacctcaaccag
acccagcgcgaacgtgtcatgtcccgcttccgcgccgggggcatctccgtgctggtcgcc
accgacgtggcagcccgtggtctggacgttgacgacgtggacaccgtcatcaacttcgac
ctgcccaacgaccccgagacctacgtgcaccgcataggccgcactggccgtgcaggccgc
accggcagggccttctcgttcgccgcaggtcgcgacgtgtacaagttgcgcgacatccag
cgcgtgaccgggtcgcgcatcgaccgccgcgccatgcccaccgccgccgacgcctcccgc
gcccgcaccgggcagttgcttgaggaagtcgccgccgggcttgccagcgccgagacctcg
gcctgcctgcctgtggtggagaagctcatcgccgaaggcgccgacccgacccagcttgcc
gccacgctgctgcgcatgatcatgcagcgcgaccgcatcgacctgccgggtgcccgccag
accgatgacatcggcaccgggcgcgtgcgcctgttcttcaacgtggggcgccgtatgcgc
atcaccccgcgtgacctcgtgggcgccatcgccggtgagacgggcatctccggccgttcc
atcggttccatcgaaatccacgaccgcttctcgttcgtggaagtggatgcctccatcgcc
cccgaagtggtgtcggtgatgcacggcaaccagattcgcggcttccgcctcgccgtggaa
caggcaagcccccgtgagggtcaggaccgcgccgcttaa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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