KEGG T00930: Dd1591

Dickeya zeae: Dd1591_4144

Entry

Dd1591_4144 CDS T00930

Gene name

ligB

Definition

NAD-dependent DNA ligase LigB (EC:6.5.1.2)

Orthology

K01972

DNA ligase (NAD+) [EC:6.5.1.2]

Organism

dze Dickeya zeae

Pathway

dze03030	DNA replication
dze03410	Base excision repair
dze03420	Nucleotide excision repair
dze03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; DNA replication [PATH:dze03030]
Genetic Information Processing; Replication and repair; Base excision repair [PATH:dze03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:dze03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:dze03430]

SSDB

Motif

Pfam:

DNA_ligase_aden DNA_ligase_OB HHH_5 HHH_2

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(4675241..4676923)

AA seq 560 aa
MRYQYALAAVWFLVSGFANATPCPAWSSARAEREVTQLGQQLTQWDNAYYEQGRSPVDDQ
VYDQLRQTLATWQRCFQSDTERFAIRLSSTGKQSHPVAHTGLKKLSEPTELKQWVARHDG
LWVQPKIDGVAVTLVYEQGKLVSAVSRGNGRQGEDWTDKVRQINAVPQALSGMSGRQIFQ
GELYLPVTEHRQYVSGGINARAQVAGEMRRKQPSPLLSRLGVFIWAWPDGPADMPTRLAK
LREMGFGLTADYTQAISSLEAAAQWRERWYRAPLPFVTDGVVLRQAKEPAGRYWQDTPAE
WAVAWKYPLMNQVTEVTGVDVEIGRTGRMTVVLQLQPVMLDDKSVSRVNLGSVGRWRQWD
VLPGDRVSISLAGLGIPRLDAVVWRAAVRESITVPAVSPFDVFSCLQWSRECQPQFLARL
VWMSGRNGLSLSGISEATWRRLAQRGTLADVVSWLALEPAQLAAAGDFNEQQAARIYRQL
QQARRQPLRRWLLALGLPVPSSARYALEGASLEQLQQRSIVEWQQFSGIGARRAQRIRDF
LHHPEIVRQLAWLNEQGVKS

NT seq 1683 nt +upstreamnt +downstreamnt
atgcgatatcaatacgcgctggcggcagtgtggtttttagtgagcggttttgccaacgcg
acgccttgtccggcatggtcgtcggcgcgcgctgaacgggaggtaacccaactggggcaa
caactcacgcagtgggacaatgcgtattacgagcagggccggagtccggtagacgatcag
gtttatgaccagttgcgtcaaacgctggccacctggcaacgctgttttcagtcggatacc
gaacgttttgcaatacgcctgtcgtcaacaggtaagcaatcacatccggtggcgcatacc
ggcctgaaaaaactgtctgaaccaaccgagttgaaacagtgggtggctcggcatgatggc
ctatgggtacaacccaagatcgatggcgtagcggtgacgctggtctacgaacaagggaaa
ctggtgagcgccgtcagtcgcggcaatgggcgtcagggcgaagactggaccgataaggta
cgccagattaacgcggtgccgcaggcgctctccggcatgtccggccgccagatttttcag
ggtgagttgtatttgccggtaacggaacaccggcagtacgtgtccggcggcatcaatgcg
cgggcgcaggtggcgggtgaaatgcggcgaaagcagccgtcgccgctgttgtcccgcctt
ggcgtatttatctgggcctggccggacggcccggcagacatgccgacgcggctggcgaaa
ttacgggagatggggtttgggctgaccgcagattacacacaagccatttcctctctggag
gcggcggcacagtggcgtgagcgctggtatcgtgcgccgctgccgtttgtaaccgatggc
gtcgtgttacgccaggcgaaggagccggcgggtcgttactggcaggataccccggcggaa
tgggccgtggcctggaaatacccgttgatgaatcaggtgacggaggtcaccggcgttgat
gttgaaataggacgtaccggcagaatgactgtggtactgcaactgcaaccggtcatgctg
gatgacaagagcgtgagtcgggtcaatctcggctcggttggtcgctggcgacaatgggat
gttttaccgggggatcgggtcagcatcagtctggcggggttggggattccccggcttgac
gcagtggtatggcgcgcagcggtgcgagagtcgataaccgttccggctgtatcgcctttt
gatgttttcagttgtttgcaatggagtcgggagtgccagccgcagtttctggctcggctg
gtatggatgagcggtcgcaacgggttgtcgctcagcggtatcagcgaagcgacctggagg
cgcctggcgcagcgcggcacgctggccgacgtggtgtcctggctggcgctggagcccgct
cagttggcggcggccggtgatttcaacgaacaacaggcggcgcggatttatcgccagttg
cagcaggcgcgccgccagccattgcggcgctggctgctggcattaggattacccgtgccc
tccagcgcccggtatgcgttggagggggcctcgctcgaacagttgcaacaacgctcaatc
gtggagtggcagcagttttccggtatcggcgctcggcgagcacagcgcattcgggatttt
ctgcatcacccggaaattgtccgccaactggcatggctcaatgaacaaggcgtgaaatca
tga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-DZE (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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