KEGG   Escherichia albertii: EAKF1_ch1650c
Entry
EAKF1_ch1650c     CDS       T03986                                 
Symbol
rnr
Name
(GenBank) exoribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
eal  Escherichia albertii
Pathway
eal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EAKF1_ch1650c (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eal03019]
    EAKF1_ch1650c (rnr)
   03016 Transfer RNA biogenesis [BR:eal03016]
    EAKF1_ch1650c (rnr)
Enzymes [BR:eal01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EAKF1_ch1650c (rnr)
Messenger RNA biogenesis [BR:eal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EAKF1_ch1650c (rnr)
Transfer RNA biogenesis [BR:eal03016]
 Prokaryotic type
  tRNA degradation factors
   EAKF1_ch1650c (rnr)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 HTH_12 RNase_II_C_S1 Rho_RNA_bind OB_Dis3 MetOD2 RNA_pol_Rbc25 Sucrose_synth TFIIE_beta YqfQ
Other DBs
NCBI-ProteinID: AHE59534
Position
complement(1748968..1751409)
AA seq 813 aa
MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASRDELAVELHIEGEEQLEALRRRLR
AMERDGQLVFTRRQCYALPERLDLVKGTVIGHRDGYGFLRVEGRKDDLYLSSEQIKTCIH
GDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTEAGVGFVVPDDSRLSFDILIPP
DQIMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNMGTGMAVDIALRTHEIPHIWPQA
VEQQVAGLKEEVPEEAKAGRVDLRDLPLVTIDGEDARDFDDAVYCEKKRGGGWRLWVAIA
DVSYYVRPPTPLDREARNRGTSVYFPSQVIPMLPEVLSNGLCSLNPQLDRLCMVCEMTVS
SKGRLTGYKFYEAVMSSHARLTYTKVWHILQGDQELREQYAPLVKHLEELHNLYKVLDKA
REERGGISFESEEAKFIFNAERRIERIEQTQRNDAHKLIEECMILANISAARFVEKAKEP
ALFRIHDKPSTEAITSFRSVLAELGLELPGGNKPEPRDYAELLESVADRPDAEMLQTMLL
RSMKQAIYDPENRGHFGLALQSYAHFTSPIRRYPDLTLHRGIKYLLAKEQGHQGNTTETG
GYHYSMEEMLQLGQHCSMAERRADEATRDVADWLKCDFMLDQVGNVFKGVISSVTGFGFF
VRLDELFIDGLVHVSSLDNDYYRFDQVGQRLMGESSGQTYRLGDRVEVRVEAVNMDERKI
DFSLISSERAPRNVGKTAREKAKKGDTGKKGGKRRQVGKKVNFEPDSAFRGEKKAKPKAA
KKEARKAKKPSAKTQKIAAATKAKRAAKKKVAE
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgtcacaagatcctttccaggaacgcgaagctgaaaaatacgcgaatcccatccctagc
cgggaatttatcctcgaacatttaaccaaacgagaaaaaccagccagccgtgatgagctg
gcagtagaactgcacatcgaaggcgaagagcaactggaagctttgcgtcgccgtctgcgc
gctatggagcgcgacggacaactggtcttcactcgccgtcagtgctatgcgctgccggaa
cgcctcgatctggtgaaaggtaccgttattggccaccgtgatggctacggctttctgcgg
gttgaagggcgtaaagatgatttgtatctctccagcgagcagattaaaacctgcattcat
ggcgatcaggtactggcgcagccgctgggcgccgaccgcaaaggccgtcgtgaagcgcgc
attgtccgcgtgctggtacccaaaaccagccagatcgtcggtcgctactttactgaagcg
ggcgtcggcttcgtggttcctgacgacagtcgtttgagcttcgatattttaatcccgccc
gatcagattatgggcgcgaggatgggctttgtggtggtggtcgaactgacccaacgtcca
actcgccgtaccaaagcggtgggtaaaatcgtcgaagtgcttggcgataatatgggcacc
ggcatggcggtcgatatcgctctgcgtacccatgaaattccgcacatctggccgcaggcc
gttgagcaacaggttgccgggctgaaagaagaagtaccggaagaggcaaaagcaggccgt
gttgatctgcgcgatctaccattggttaccattgatggtgaagatgctcgtgactttgac
gatgcggtttactgcgagaagaaacgcggcggcggttggcgtttgtgggtcgcaattgcc
gacgtcagttactatgtgcgtccgccaacaccgctggacagagaagcgcgtaaccgtggt
acgtcggtgtacttcccgtcgcaggttattccgatgttgccggaagtgctctctaacggc
ctgtgctcgctcaacccgcagctagaccgcctgtgtatggtgtgcgaaatgacggtttca
tcgaaagggcgattgaccggctataaattctacgaagcggtgatgagttctcacgcgcgt
ctgacctacaccaaagtctggcatattctgcaaggcgatcaggagctgcgcgagcagtac
gcaccgctggttaagcatctcgaagagctgcataacctctataaagtgctggataaagcc
cgtgaagagcgcggcgggatctcatttgaaagcgaagaagcgaagtttattttcaacgct
gaacgtcgtattgaacgtatcgaacagactcagcgtaacgatgcacacaaattaattgaa
gagtgcatgattctggcgaatatctcggcggcgcgtttcgttgagaaagcgaaagaaccg
gcactgttccgtattcacgacaagccgagcactgaagcgattacctccttccgttcagta
ctggcggagctggggctggaactacccggcggtaacaagccggaaccgcgtgactacgct
gagctgctggagtcggtggccgaccgtcctgatgcagaaatgctgcaaaccatgctgctg
cgctcgatgaaacaggcgatttacgatccagaaaaccgcggtcacttcggtctggcatta
cagtcttatgcgcactttacttcgccgattcgtcgttaccctgatctgacgctgcaccgc
ggcattaagtatctgctggcgaaagagcaggggcatcaggggaataccaccgaaactggc
ggttatcattattcgatggaagagatgctgcaactgggtcagcactgttcgatggcggaa
cgccgtgccgatgaagcgacgcgtgatgtggctgactggctgaagtgtgactttatgctc
gaccaggttggcaacgtctttaaaggcgtcatctccagcgttaccggatttggtttcttc
gtccgtctggacgaactgtttattgatggcctggttcacgtctcttcgctggacaacgac
tactatcgttttgaccaggtgggtcaacgtctgatgggcgaatccagtggtcagacttat
cgtctgggcgatcgcgtggaagttcgcgtcgaagcggttaatatggacgagcgcaaaatc
gactttagcctgatctccagcgaacgcgcgccgcgtaacgtcggtaaaacggcgcgcgag
aaagcgaaaaaaggcgatacagggaaaaaaggcggcaagcgtcgtcaggtcggtaaaaag
gtaaactttgagccagacagcgccttccgcggtgagaaaaaagcgaagccgaaagcggcg
aagaaagaggcgagaaaagcgaaaaagccctcggctaaaacgcaaaaaatagctgcagcg
accaaagcgaagcgtgcggcgaagaaaaaagtggcagagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (23)   

Download RDF
DBGET integrated database retrieval system