KEGG   Exiguobacterium sp. AT1b: EAT1b_0852
Entry
EAT1b_0852        CDS       T00897                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
eat  Exiguobacterium sp. AT1b
Pathway
eat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EAT1b_0852
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eat03019]
    EAT1b_0852
   03016 Transfer RNA biogenesis [BR:eat03016]
    EAT1b_0852
Enzymes [BR:eat01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     EAT1b_0852
Messenger RNA biogenesis [BR:eat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     EAT1b_0852
Transfer RNA biogenesis [BR:eat03016]
 Prokaryotic type
  tRNA degradation factors
   EAT1b_0852
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 RNase_II_C_S1 Rho_RNA_bind DprA_WH
Other DBs
NCBI-ProteinID: ACQ69781
UniProt: C4L5G6
Position
complement(803779..806184)
AA seq 801 aa
MNLRDQLLEILQASEKPLSVDQLTERLQLASTDDFKELIRTLNALEEEGAIGRTRTNRYG
TLATLGQVAGIISIHQRGFGFLSVEGEAEDVFLPPDQLKDVYHGDTILVKKREDNRGKTE
GILLKVLKRGLSEFVGTYTLPSGRLDQFAFIEPDDKRINFWPVVNPDKSLGAVDGHKVVV
RITKYPDGRFAGACDVVRIIGHKNDPGVDILSIVYKHGIPTEFPEDVIAQANAVPDEADE
KDFIGRVDLRDETIFTIDGEDAKDLDDAVHVKKLDNGNYELGVHIADVSHYVKEGSPLDV
EAFERGTSVYLVDRVIPMLPHRLSNGICSLNPHVNRLTLSCVMEISPQNGKVVRHDLFPS
VIKTTERMTYTNVREIIERDDEETLKKYEPFIGEFDLMAELAEVLRKRRNSRGAINFDFA
EAKVVVNEEGKPADIVLRPRSVAEKLIEEFMLAANETVAEHFHKMDVPFIYRVHDNPKPD
KLDFFFDFVANFGVHIERIKGQTVEPKTLQKILKAIDGEPEEPVISTIMLRSMQQAKYDD
VSLGHFGLATDFYTHFTSPIRRYPDLIVHRLMRTYVFNNDLSEKTIAKYEDRLGAIAEQA
SKRERRSVDAERETQALKKAEYMEAHLGEEFDGVVAGVTNFGMFIELPNTIEGLVRLQSM
DDYYHFDESQLMLLGERTKRQFRIGDAVRVKVDAVNLDERTIDFTVVGMPKREQSSRRQP
TTIKAKGGRPKKDEKDRRGGRGRDDKKKRGKPGRPGKPGKPGEKPKRDGEKSSQGRSALD
LKKKDKHKRKGDAKRGAKKRR
NT seq 2406 nt   +upstreamnt  +downstreamnt
ttgaatttacgtgaccaattactagagatcttgcaggcgagcgaaaaaccgctctctgtg
gatcaactgaccgagcgactacagctcgcgtcgacggatgacttcaaagagctcatccgc
acattgaatgccctcgaggaagagggtgccatcggccggacgcggacgaaccgttacggg
acgctcgccacgctcggacaagtcgcgggaatcatctcgattcaccagcgcggcttcggc
ttcttgtcggtcgaaggggaagcggaagacgtgttcttgccgcccgaccaactgaaggac
gtctaccatggcgatacgatcctcgttaaaaaacgcgaggacaatcgtggcaagacggaa
gggattttattgaaagtactgaagcgcggactctccgagttcgtcgggacgtatacgctc
ccgagcggtcgactcgaccagttcgccttcatcgagccggatgataaacgcatcaacttc
tggccggtcgtcaacccggacaagtcactcggtgccgtcgacggacataaagtcgtcgtg
cgcatcacgaagtatccggacggacgcttcgccggtgcctgtgacgtcgtccgtatcatc
gggcataagaacgaccctggcgtcgacatcttgtcgatcgtctataagcacggcatcccg
acggagttcccggaggacgtgatcgcccaggcgaacgcggtaccggacgaggccgacgag
aaagacttcatcggacgcgtcgaccttcgtgacgagacgatcttcacgattgacggtgaa
gatgcgaaagacttggacgatgccgtccacgtcaaaaaacttgataacggcaactacgag
ctcggtgtccatatcgctgacgtctcgcattacgtgaaagagggctcaccactagacgtc
gaggcgttcgaacgtgggacgagtgtgtatctcgtcgaccgtgtcattccgatgctgccg
caccgactctcgaacgggatttgttccctcaacccgcacgtcaaccgcttgacgctcagc
tgcgtcatggagatctccccgcaaaacgggaaggtcgttcgccatgatctgttcccgagt
gtcatcaagacgacggagcggatgacgtatacgaacgtccgtgagatcatcgaacgtgat
gacgaagagacattgaaaaagtacgaaccgttcatcggtgagttcgacctcatggccgag
ctcgcggaagtccttcggaaacgtcgtaactcgcgcggtgccatcaacttcgatttcgct
gaggcgaaggttgtcgtcaacgaggaagggaagccggcagatatcgtgcttcgtccacgt
tcggtcgccgagaagttgatcgaagagttcatgctcgcggccaacgagacggtcgcggaa
cacttccacaagatggacgtgccgttcatctatcgtgtccacgacaatccgaaaccggac
aagctcgacttcttcttcgactttgtcgcaaactttggcgttcacatcgaacgcatcaaa
gggcagacggtcgaaccgaagacgcttcaaaagattttgaaggcgatcgacggagaaccg
gaagagccggtcatcagcacgattatgcttcgttcgatgcaacaggcgaaatatgacgac
gtctcgctcggtcacttcggactcgcgacagacttctatacgcacttcacgtcaccgatt
cgtcgttatccggacttgatcgtccaccgtctcatgcgcacgtacgtcttcaacaacgat
ttgtcggagaagacgatcgcgaagtacgaggaccgtctcggggcgatcgccgaacaggca
tcgaaacgggaacgtcgctcggtcgacgcagagcgcgagacgcaggcgctcaagaaagcc
gaatacatggaagcccatctcggtgaagagttcgatggtgtcgtcgccggcgtcacgaac
ttcgggatgttcatcgaacttccgaatacgattgaagggcttgtccgtctccagtcgatg
gatgactactaccactttgacgaatcacagctcatgctcctcggggagcggacgaaacgt
caattccgcatcggggacgccgtccgtgtcaaagtcgatgccgtcaacttagacgagcgg
acgatcgacttcacggtcgtcggcatgccgaaacgggaacagtcaagccgtcgccaaccg
acgacgatcaaagcgaaaggcggtcgtccgaagaaggacgagaaagaccgtcgtggcggt
cgcggtcgggacgacaagaagaagcgcggcaaaccaggaagacctggcaagccgggcaaa
ccaggtgagaaaccgaaacgagacggggagaagtcttcccaaggccgttcggcactcgac
ctgaagaagaaagacaagcacaaacgaaaaggcgacgccaaacgaggtgcgaagaaacgt
cgctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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