KEGG   Enterobacter asburiae L1: DI57_10210
Entry
DI57_10210        CDS       T03084                                 
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
eau  Enterobacter asburiae L1
Pathway
eau03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:eau00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    DI57_10210
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:eau03400]
    DI57_10210
Enzymes [BR:eau01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     DI57_10210
DNA repair and recombination proteins [BR:eau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      DI57_10210
SSDB
Motif
Pfam: TRCF MFD_D3 DEAD UvrB_inter Helicase_C CarD_TRCF_RID ResIII UB2H ERCC3_RAD25_C RecG_dom3_C
Other DBs
NCBI-ProteinID: AHW94744
Position
2152733..2156179
AA seq 1148 aa
MPEHYRYSLPVKAGDQRQLGELTGAACATLVAEIAERHPGPVILVAPDMQNALRLHDEIR
QFTDSLVFSLADWETLPYDSFSPHQEIISSRLSTLYQLPTMQRGVLIVPVNTLMQRVCPH
SYLHGHALVMKKGQRLSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPY
RLDFFDDEIDSLRVFDADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRD
AEHIYQQVSKGTLPAGIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFESETR
ARFENRGVDPMRPLLPPEALWLRTDELNAELKRWPRMQLKTDSLADKAANTNLAFRTLPD
LAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSEATG
NGRYLMIGAAEHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRNLAELHPG
QPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYAGGAEDNA
PLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLFCDSFPFE
TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVAVLVPTTL
LAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKLLQGDVKW
RDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPP
ARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELVPEARIAI
GHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLR
GRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLG
EDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDV
NTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEG
NEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKTRMDWVRNFMR
QLEENAIA
NT seq 3447 nt   +upstreamnt  +downstreamnt
atgcctgaacactatcgttattccttgcctgtcaaagcgggcgaccagcgccagctgggt
gaactcacgggcgcggcgtgcgccacgctggtggcggaaatcgccgagcgtcatccaggc
ccggtgattctggttgccccggatatgcaaaacgccctgcgcctgcacgatgaaattcgc
cagttcaccgatagcctggtgttcagcctggccgactgggagacgctgccgtatgacagc
ttctctccgcatcaggagatcatctcctcgcgcctgtcgacgctctatcagctgccgacc
atgcagcgcggcgtgctgattgtgccggtgaataccctgatgcagcgcgtctgtccgcac
agctatctgcacggtcacgcgctggtgatgaaaaaaggccagcgcctctcccgggatgcc
ctgcgcgcgcagcttgacggtgccggctatcgccacgtcgaccaggtgatggaacacggg
gaatacgcgacccgcggcgcgctgctcgatctttatccgatgggcagcgaccagccgtat
cgtctggatttctttgatgatgaaatcgacagcctgcgcgtattcgacgccgacacgcag
cgcacgctggaggaagtagagtccatcaatttactgcccgcgcatgagttccccacggac
aaaaccgctatcgagctgttccgcagccagtggcgcgataagttcgaggtgaagcgcgac
gcggaacatatttatcagcaggtcagtaaaggcacgcttcctgccgggatcgaatactgg
cagccgctgttcttcaacgagccgctgcctgccctgttcagctacttcccggcgaatacg
ctgattgtcaacaccggggatatcgacgccagcgccagccgctttgaaagcgaaacccgc
gcccgctttgaaaaccgtggcgttgatccgatgcgtccgctgctgccgccggaagcgctg
tggctgcgcaccgacgagctcaacgccgagctgaagcgctggccgcgcatgcagctgaaa
accgattcgcttgccgataaggccgccaataccaacctggccttccggacgctgccggac
ctggccgttcaggcgcagcagaaatccccgctggataatctgcgcaagttcctggagtcc
ttcaccggcccggtggtgttctccgttgagagtgaaggccgccgcgaagcgttaggtgaa
ctgctgggacgcatcaaggtggcgccgaagcgcatcctgcgtttgagcgaagcgaccgga
aacggtcgttatctgatgattggcgccgccgagcatgggttcatcgacacgctcaacaac
ctggcgctgatttgcgaaagcgacctgctgggcgagcgcgtcgcgcgccgccgtcaggac
agccgtcggaccatcaacccggacacgctgatccgtaacctggccgagctgcacccgggc
cagccgattgttcacctggagcatggcgttgggcgctatcaggggatgaccacgctggaa
gcgggcggcatcaaaggtgaatacctgatgctgacctacgctaacgacgccaaactgtat
gtcccggtctcctccctacatctgatcagccgctacgcgggcggtgccgaagacaatgcg
ccgctgcacaagctgggcggcgatgcctgggcgcgcgcgcgccagaaggcggcggaaaaa
gtacgcgacgtggccgccgagctgctggatatctacgcccagcgcgcggctaaacagggc
ttcgcctttaagcatgataaagaacagtaccagctgttctgcgacagcttcccgtttgaa
accacgccggatcaggcccaggccatcaacgccgtgctgagcgatatgtgtcagccgctg
gctatggaccgcttagtctgtggcgacgtcggcttcggaaaaaccgaagtggcgatgcgc
gccgccttccttgcggtggaaaacaataagcaggtggcggtgctggtgccgaccaccctg
cttgctcagcagcacttcgacaacttccgcgaccgtttcgccaactggccggtacgtatt
gagatgctctcgcgttttcgcagtactaaagagcagacccagatcctcgaacaggccagc
gaaggcaaaattgatattctgatcggcacccacaagctgctgcaaggcgacgtgaagtgg
agagatctggggctgctgatcgtcgacgaagagcaccgcttcggggtgcgtcataaagaa
cgcatcaaagcgatgcgagccgacgtcgatatcctgaccctgaccgcaacgccaatcccg
cgaaccctcaacatggcgatgagcggcatgcgcgatctgtcgattatcgccacgccgccg
gcgcgccgtctggcggtgaaaacctttgtccgggagtacgataatctggtggtgcgtgag
gccattctgcgtgaagtgctgcgtggggggcaggtctactacctctacaacgacgtggaa
aacatccagaaagcggcggacaggctggcggagctggtgccggaagcgcgcatcgctatc
ggtcacgggcagatgcgcgagcgcgagctggaacgggtaatgaacgacttccaccaccag
cgctttaacgtgctggtgtgcaccaccatcattgagaccgggatcgacattccgacggcg
aacaccatcatcattgagcgtgcggatcactttggcctggcacagcttcaccagctgcgc
ggccgcgtcgggcgttcgcaccatcaggcctacgcctggctgctgacgccgcatccgaaa
gcgatgaccaccgacgcgcaaaagcgtctggaagccatcgcctcgctggaagacctgggc
gcaggctttgcgctggcgacgcacgatctcgagatccgcggtgccggcgagctgctgggt
gaagaccagagcggctccatggagaccatcggcttctcgctctatatggagctgctggaa
aacgcggttgatgccctgaaggccggacgcgagccgtcgctggaagatctcaccagccag
cagaccgaggtcgagctgcgtatgccttccctgctgccggacgattttattccggacgtg
aatacccgactgtcgttctacaagcgcatcgccagcgcgaagaaggagaacgagctggaa
gagattaaggtggagctgattgaccgctttggcctgctgcccgatccggcgagaaatttg
ctggatatcgcgagactgcgccagcaggcgcaaaagctggggatccgcaagctcgaaggc
aatgaaaaaggcggcgtgattgaattcgccgagaagaatcacgtcaacccgatgtggctg
atcggcctgctgcaaaaacagccgcagcatttccgtctggatggtccaacccgtctgaaa
tttacccaggagctgacggagcgcaaaacccgtatggactgggtgcgtaacttcatgcgt
cagctggaagagaacgcgatcgcataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (19)   

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