KEGG   Escherichia coli BL21(DE3): ECD_03504
Entry
ECD_03504         CDS       T00931                                 
Symbol
ligB
Name
(GenBank) DNA ligase, NAD(+)-dependent
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
ebl  Escherichia coli BL21(DE3)
Pathway
ebl03030  DNA replication
ebl03410  Base excision repair
ebl03420  Nucleotide excision repair
ebl03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ebl00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    ECD_03504 (ligB)
   03410 Base excision repair
    ECD_03504 (ligB)
   03420 Nucleotide excision repair
    ECD_03504 (ligB)
   03430 Mismatch repair
    ECD_03504 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ebl03032]
    ECD_03504 (ligB)
   03400 DNA repair and recombination proteins [BR:ebl03400]
    ECD_03504 (ligB)
Enzymes [BR:ebl01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     ECD_03504 (ligB)
DNA replication proteins [BR:ebl03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     ECD_03504 (ligB)
DNA repair and recombination proteins [BR:ebl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     ECD_03504 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     ECD_03504 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     ECD_03504 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      ECD_03504 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: ACT45302
Position
complement(3686280..3687962)
AA seq 560 aa
MKVWMAILISILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGE
IFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELA
TAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatctgtgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaaggaaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtcttacgcagtggcaacgctgctttgggagcgagccccgc
gacgtgatgatgccgcctttaaatggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggtggataaaaacgcattaagtctgtggatgcgagaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttagctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagtacgcttcagggggaa
atatttctccagcgcgaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcttgatgatgcgccaggacgatagcgacacgctgaattctctgggcgtt
tttgtctgggcatggccggatggaccgcagttaatgtctgatcgtttaaaagagctggct
accgcaggttttactctaacgcagacgtatacccgtgcggtgaaaaatgctgatgaagtt
gcgcgcgtacgcaatgagtggtggaaagcggaattacccttcgtcaccgatggcgtagtt
gtacgagcggcgaaagagccagaatcccgccattggctaccgggccaggcagagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcaattcagtttgcg
gtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacctgtcatgctggatgat
aaaaaagtccagcgggtgaatattggttccgtcaggcgctggcaggagtgggatattgcg
cctggtgatcagattctcgtcagccttgccggtcagggtattcctcgcattgatgatgtg
gtgtggcgcggtgcagaacgtacaaaaccgacaccgccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
ggggcaaaacaggttcttgggctggatggcattggtgaggccggctggcgcgcgctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagctatggcatcagtttaatctggct
cgtaagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggagcagttctgg
cagcagctgccgggcactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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