KEGG   Pectobacterium atrosepticum SCRI1043: ECA0223
Entry
ECA0223           CDS       T00186                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase, beta-subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
eca  Pectobacterium atrosepticum SCRI1043
Pathway
eca03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:eca00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ECA0223 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:eca03021]
    ECA0223 (rpoB)
   03400 DNA repair and recombination proteins [BR:eca03400]
    ECA0223 (rpoB)
Enzymes [BR:eca01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ECA0223 (rpoB)
Transcription machinery [BR:eca03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ECA0223 (rpoB)
DNA repair and recombination proteins [BR:eca03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ECA0223 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_2 RelB SPG4
Other DBs
NCBI-ProteinID: CAG73142
UniProt: Q6DAN0
Position
255584..259612
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDIPYLLSIQLDSFQKFIEQDPEGQHGLEAAFRSVFPIK
SYSGNSELQYVSYRLGEPVFDVKECQIRGVTFSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALGYSTAQILDLFFDKIVYEINGNKLQMD
LVPERLRGETASFDIEANGKVYIEKGRRITARHIRQLEKDSIERIEVPVEYIAGKVLSKD
YIDESTGELIGAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGAYMSETVRVDPSSDRL
SALVEIYRMMRPGEPPTREAAETLFENLFFSEDRYDLSAVGRMKFNRSLLRDEIEGSGIL
SKDDIIEVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRRVRENVVT
DEIHYLSAIEEGNFVIAQANTNLDEEGRFIDELVTCRNKGESSLFSRDQVEYMDVSTQQI
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGTVQYVDASRIVIRVNDDEMYPGEAGIDIYNLTKYTRSNQNTCISQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTIIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
TEELQILEAGLFGRIHAVLVSGGVEADKLDKLPRERWLELGLTDEDKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRQIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGEKINAMLKQHEEVTK
LREFIQRAYDLGDDLRQKVDLSTFSDEEVMRLAENLKKGMPIATPVFDGAKEKEIKELLQ
MGGIPTSGQITLYDGRTGEQFERQVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEEK
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttttggacataccttatctcctttctatccaacttgactcgttccagaagtttatcgag
caagacccggaaggtcagcacggtttggaagctgcattccgttctgttttccccataaag
agctatagcggtaattcagagctgcaatatgttagctatcgcttgggcgaaccggtattt
gacgttaaagaatgtcagatccgtggtgtgacgttctctgcaccgctacgcgtgaaactg
cgtctggtgatctacgagcgtgaagcgcctgaaggcaccgttaaagacatcaaagaacaa
gaagtttacatgggcgaaattccgctcatgaccgataacggtaccttcgtgatcaacggt
actgagcgtgtaatcgtgtctcagttgcaccgtagtccaggtgtgttcttcgatagcgac
aaaggtaaaacccactcttcaggtaaggtgctgtataacgcacgtattattccttaccgt
ggttcctggctggatttcgagtttgatccgaaggataacctgtttgtccgtatcgaccgt
cgtcgcaaattgcctgcgaccattatcctgcgcgcactgggttactccaccgcacagatt
ctcgatcttttcttcgataaaattgtctatgaaatcaatggcaataaattgcagatggat
ctggttcctgaacgcttgcgtggtgaaactgcgtcgtttgatattgaagcgaacggtaaa
gtttatatcgaaaaaggtcgccgcatcactgcacgtcatattcgtcagttagagaaagac
agcattgagcgcattgaagtgcctgttgaatatatcgctggaaaagtgctgtccaaagat
tatatcgacgagagcactggcgagctgatcggcgcagccaacatggagctgtcgctggac
ctgctggctaaactgagccagtctggtcacaagcgtattgagaccctgttcaccaacgat
cttgatcacggtgcatacatgtctgaaaccgtgcgcgtcgatccgtcaagcgatcgtctg
agcgcgctggttgaaatctatcgcatgatgcgtcctggtgaaccgccaacgcgtgaagct
gcagaaacgctgttcgagaacctgttcttctctgaagaccgctacgacttgtctgcggtt
ggccgtatgaagttcaaccgttctctgctacgcgatgagatcgaaggttccggtatcctg
agcaaagatgacatcatcgaagtgatgaagaagctcattgatatccgtaacggtaaaggc
gaagtggatgatatcgaccacctcggcaaccgtcgcatccgttccgtcggcgaaatggca
gaaaaccaattccgcgttggtctggtgcgtgtagaacgtgccgtaaaagagcgcctgtct
ctgggtgacctcgatacgctgatgccacaggacatgattaacgccaagccgatttcggct
gccgtgaaagagttcttcggttcgagccaactgtcacagtttatggaccagaacaaccca
ctgtccgagattacgcataaacgtcgtatctctgcattgggcccaggtggtctgacgcgt
gaacgtgctggctttgaagttcgtgacgtacacccgactcactatggtcgtgtttgtcct
atcgaaacgccggaaggtccgaacatcggtctgatcaactccctgtccgtttatgcgcaa
actaacgaatacggtttccttgaaaccccatatcgtcgcgtgcgtgaaaacgtggttacg
gatgagattcattacctgtctgcgattgaggaaggtaacttcgttatcgcacaggcaaac
accaatttagacgaagaaggccgcttcatcgacgaactggttacctgccgtaacaaaggg
gagtccagcttgttcagccgtgatcaggttgaatatatggacgtttccacacagcagata
gtttccgtcggtgcgtccctgattccgttcctggaacacgatgacgccaaccgtgccctg
atgggtgcgaacatgcaacgtcaagccgttccgaccttacgcgctgataagccgctggtt
ggtacaggtatggaacgcgctgttgcggttgactccggtgtaactgccgtagccaaacgt
ggtggtacagtacagtacgtggatgcatctcgtattgtaatccgcgttaatgacgatgaa
atgtatccgggcgaagccgggatcgacatctataacctgaccaaatatacccgttctaac
cagaacacctgcatcagccagatgccgtgtgtgtcgctgggtgaacctgtagaacgtggt
gatgttctggccgatggcccgtccaccgatctgggtgaactggcgctgggtcagaatatg
cgcgtggcattcatgccatggaatggttacaacttcgaagactccatcctcgtttccgag
cgtgtggttcaggaagatcgctttacgaccatccacattcaggaactggcctgtgtctct
cgtgacaccaagttagggccggaagaaattactgcggacatcccgaacgtgggtgaagca
gcactttccaaactggatgagtccggcatcgtttacatcggtgctgaagtaaccggtggt
gacattctggttggtaaggtaacgccgaaaggtgaaacccaactgacgccagaagagaag
ctgctgcgtgcgatcttcggtgagaaagcgtctgacgttaaagactcttctctgcgtgta
ccaaacggtgtttccggtacgattatcgacgtacaagtctttacccgcgacggcgtggaa
aaagacaaacgtgcgttggaaatcgaagaaatgcagctgaagcaggcgaagaaggacctg
actgaagagttgcagattctggaagcgggcctgtttggacgtatccacgctgtgctggtt
tctggcggcgttgaagctgacaaactggacaaactgccgcgcgagcgttggttggaactg
ggcctgactgacgaagataaacagaatcagttggaacagttggcagaacagtatgatgag
ctgaagcacgagtttgagaaaaaactcgaagctaagcgccgtaaaatcactcagggcgat
gatctggcaccaggtgtgttgaaaatcgttaaggtttatctggctgttaagcgtcagatc
caaccgggtgacaagatggctggtcgtcacgggaacaaaggtgttatctccaagatcaac
ccgatcgaagatatgccttacgatgagaacggtacgccggtcgatatcgtactgaacccg
ctgggtgtaccttcacgtatgaacattggtcagattctggaaacccacttgggtatggct
gcaaaaggtatcggcgagaagatcaacgccatgcttaagcagcatgaagaagtgactaaa
ttgcgtgagtttatccagagagcctacgatctgggcgacgatttgcgtcaaaaagttgac
ctgagcactttctccgacgaagaagttatgcgtctggctgaaaacctgaaaaaaggtatg
ccaattgcaacgccggtattcgacggtgcaaaagagaaagaaatcaaggaactgttgcag
atgggcggtatccctacctccggtcagattaccctgtacgatggacgtaccggtgagcaa
tttgagcgtcaggttaccgtgggctacatgtacatgctgaaactgaaccacttggttgac
gataagatgcatgcccgttccaccggttcttatagcctggttactcagcagccgctgggt
ggtaaggcgcagttcggtggtcaacgcttcggtgagatggaagtgtgggcgctggaagct
tatggtgcggcttataccctgcaagaaatgttgactgttaagtctgatgacgtgaacggc
cgtaccaagatgtataagaacatcgtggatggcaatcatcagatggagccaggcatgccg
gaatccttcaacgtattgttgaaagaaatccgctcgctgggtatcaacatcgagctggaa
gaaaagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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