KEGG   Enterococcus casseliflavus: ECBG_03007
Entry
ECBG_03007        CDS       T02623                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ecas  Enterococcus casseliflavus
Pathway
ecas03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ecas00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ECBG_03007
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecas03021]
    ECBG_03007
   03400 DNA repair and recombination proteins [BR:ecas03400]
    ECBG_03007
Enzymes [BR:ecas01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ECBG_03007
Transcription machinery [BR:ecas03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ECBG_03007
DNA repair and recombination proteins [BR:ecas03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ECBG_03007
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-GeneID: 15143698
NCBI-ProteinID: EEV40738
UniProt: C9ACX9
Position
complement(3332235..3335852)
AA seq 1205 aa
MAGHVVKYGKHRERRSFARISEVLELPNLIEIQTDSYQWFLDEGLREMFEDILPIEGFNG
NLSLEFVDYELKEPKYTVEEARAHDANYSAPLHVTLRLTNRETGEIKSQEVFFGDFPLMT
EQGTFIINGAERVIVSQLVRSPGVYFHGKVDKNGKEGFGSTVIPNRGAWLEMETDAKDIS
YVRIDRTRKIPLTVLVRALGFGSDDTIFEIFGDSESLRNTIEKDLHKNASDSRTEEGLKD
VYERLRPGEPKTADSSRSLLNARFFDPKRYDLANVGRYKVNKKLDLKTRLLNLTLAETLV
DPETGEIIVEKGTVLTHQVMETLGAFIDNGLNSVTYYPSEDGVVTEPMTVQVIKVFSPKD
PEQEVNVIGNGYPDTATRTVRPADIIASMSYFFNLMEGIGNVDDIDHLGNRRIRSVGELL
QNQFRIGLARMERVVRERMSIQDTETLTPQQLINIRPVVASIKEFFGSSQLSQFMDQTNP
LGELTHKRRLSALGPGGLTRDRAGYEVRDVHYSHYGRMCPIETPEGPNIGLINSLASYAK
VNKYGFIETPYRRVDRETGRVTDKIDYLTADTEDHYVVAQANSLLNEDGSFVNDVVMARA
TSENLEVSIDKVDYMDVSPKQVVAVATACIPFLENDDSNRALMGANMQRQAVPLINPKAP
WVGTGMEYKSAHDSGAALLCKHDGIVEYVDAAEVRVRRDNGALDVYSVTKFRRSNSGTSY
NQRPLVALGEKVEKGDILADGPSMEQGEMALGQNVLVAFMTWEGYNYEDAIIMSRRLVKD
DVYTSVHIEEYESEARDTKLGPEEITREIPNVGEDALKDLDEMGIIRIGAEVKDGDLLVG
KVTPKGVTELSAEERLLHAIFGEKAREVRDTSLRVPHGGGGIVHDVKIFTREAGDELSPG
VNMLVRVYIVQKRKIHEGDKMAGRHGNKGVVSRIMPEEDMPFLPDGTPVDIMLNPLGVPS
RMNIGQVLELHLGMAARQLGIHVATPVFDGASDEDVWATVAEAGMASDAKTVLYDGRTGE
PFDGRISVGVMYMIKLAHMVDDKLHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVWALE
AYGAAYTLQEILTYKSDDVVGRVKTYEAIVKGEPIPKPGVPESFRVLVKELQSLGLDMRV
LDIDDAEIELRDMDDDDDDLITVDALTKFAEQQTARELEQKAQTEAKNAADALNQQIETA
EDRLQ
NT seq 3618 nt   +upstreamnt  +downstreamnt
ttggctggacacgtagtaaaatacggaaagcatcgcgaacgtagaagtttcgcacggatc
agtgaagtattagaattaccgaatttgattgaaattcaaaccgactcttaccaatggttc
ctagatgagggcctaagagaaatgtttgaagatattttgccaatcgaaggattcaacggt
aacttgtccctagaatttgtggattatgaattgaaagaaccaaagtatacagtagaagaa
gcccgtgcccatgatgcaaactattcggcaccattacatgttactttgcgtttgacgaac
cgtgaaactggggaaatcaaatcccaagaagtattctttggtgatttcccattaatgact
gaacaaggaacctttatcatcaacggggcagaacgggttatcgtttctcagttggtccgc
tctccaggtgtatatttccatggcaaagtcgataaaaacggcaaagaaggctttggttca
actgttattcctaaccgcggtgcgtggttagaaatggaaactgatgccaaagatatctct
tacgtacggattgaccgtacccgtaaaattcctttgacggtcttagtccgtgccctaggg
tttggttctgatgatacgatctttgaaattttcggagacagtgaatcattgcgcaacacg
atcgaaaaagacttgcataaaaacgcaagcgattctcgtaccgaagaaggattgaaagat
gtttacgaacgtcttcgtccaggcgagccaaaaacagcagacagctcacgtagtttgctg
aacgcacgtttcttcgatccaaaacgttacgacttagcaaatgttggtcgttacaaagta
aacaaaaaattagacttgaaaacacgtctattgaacttgaccttagcagaaaccttggtt
gaccctgaaacaggcgagatcattgttgaaaaaggcactgttttgactcaccaagtcatg
gaaacactaggcgcatttatcgataatggcctaaacagtgtaacgtactatccatcagaa
gatggggtcgttaccgaaccaatgaccgtccaagtcatcaaagtcttttcaccaaaagat
ccagaacaagaagtcaacgtgatcggtaatggctatccagatactgctacacgtacggtt
cgtccagcagacatcattgcttcaatgagctacttcttcaacttgatggaaggcattggc
aatgtcgatgacatcgaccacttaggaaaccgtcggattcgttctgttggtgaattattg
caaaaccaattccggatcgggcttgctcggatggagcgtgtcgtgcgtgaacggatgtcg
atccaagacaccgaaaccttgacaccgcaacaattgatcaacattcgtccggttgtcgca
agtatcaaagaattctttggttcttctcagttgtcacagttcatggaccaaacaaaccca
ctgggtgagttgacccataaacgtcgtctatctgccttaggacctggtggtttgacccgt
gaccgtgccggctatgaagtccgagacgttcactattcccactatggccgtatgtgtccg
atcgaaacgcctgagggaccaaacatcgggttgatcaacagcttggcctcttatgccaaa
gtcaacaagtatggcttcattgaaacaccataccgtcgtgttgaccgcgaaacaggccgt
gttactgacaagatcgattacttgactgccgataccgaagaccactacgttgtggcccaa
gcaaacagcttgttaaatgaagacggctctttcgtaaacgacgttgttatggcgcgtgct
acttctgaaaacttggaagtttcgatcgataaagtcgactacatggacgtatcaccaaaa
caagtagtcgcagtcgcaaccgcatgtattcctttcttggaaaacgatgactccaaccgt
gccttgatgggtgccaacatgcagcggcaagctgtaccattaatcaatccgaaagcacct
tgggttggtactggtatggaatacaaatcagcacatgactcaggagctgctttgttatgt
aaacatgatggaatcgtagaatacgtggatgcggccgaagtgcgcgttcgtcgtgacaat
ggcgcattggacgtttattctgttaccaaattccgtcgttcaaactcaggaaccagctac
aaccaacgtccattagtggcacttggtgaaaaagtcgaaaaaggcgacatcttagcagat
ggcccatctatggaacaaggcgaaatggcactaggacaaaacgtcttagtcgcattcatg
acttgggaagggtacaactatgaagatgccatcatcatgagccgtcgtttggtgaaagat
gatgtttacacttctgtccatattgaagaatatgaatcagaagcccgcgacacaaaatta
ggacctgaagaaatcactcgcgaaatcccgaacgttggggaagacgcattgaaagaccta
gacgaaatggggattatccgcattggtgcggaagtcaaagatggcgatctgcttgttggg
aaagtcacgccaaaaggggtaacggaactttcagcagaagagcgtttattgcacgcaatc
tttggtgaaaaagcccgcgaagtgcgtgacacttctctacgcgtgcctcacggcggcggc
ggaatcgtccacgatgtcaaaatctttacccgcgaagctggcgatgaattgtcaccaggt
gtgaacatgctggttcgcgtttatatcgttcaaaaacggaaaatccatgaaggggataaa
atggccggacgtcacggaaacaaaggggtcgtttctcgcattatgccagaagaagacatg
cctttcttaccagatggcacaccagtcgatatcatgctgaacccattaggggtaccttct
cggatgaacattggacaagtattagagttacacttaggaatggctgcgcgtcaactaggc
attcacgtggcaacaccagtctttgatggtgccagcgatgaagatgtttgggcaaccgtt
gctgaagcaggaatggccagcgatgccaaaacagtgctttacgacggacgtaccggcgaa
ccatttgatggccgcatctccgttggtgtcatgtacatgatcaaattggcccacatggtc
gatgataaattgcatgcccgttccattggaccttactcattggttactcaacaaccattg
ggaggaaaagctcaatttggtggacaacgtttcggagagatggaagtttgggcactggaa
gcatacggtgctgcttacaccttgcaagaaatcttgacctacaaatcagatgacgtggtt
ggtcgtgtgaaaacatacgaagcgatcgtcaaaggggaaccaattccaaaaccaggtgta
ccagaatcattccgcgtattagtaaaagaattgcaatcactgggtctagacatgcgtgtc
ctagatatcgatgatgcagagatcgaactacgtgatatggatgatgacgatgatgatttg
atcaccgttgatgccttaacaaaatttgcggagcaacaaacagcccgcgaattagaacaa
aaagcacaaacagaagctaaaaatgccgccgacgcgttgaaccaacaaatcgagacagca
gaagatcgcttgcaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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