KEGG   Equus caballus (horse): 100051719
Entry
100051719         CDS       T01058                                 
Symbol
HFM1
Name
(RefSeq) probable ATP-dependent DNA helicase HFM1 isoform X1
  KO
K15271  ATP-dependent DNA helicase HFM1/MER3 [EC:5.6.2.4]
Organism
ecb  Equus caballus (horse)
Brite
KEGG Orthology (KO) [BR:ecb00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:ecb03036]
    100051719 (HFM1)
Enzymes [BR:ecb01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     100051719 (HFM1)
Chromosome and associated proteins [BR:ecb03036]
 Eukaryotic type
  Meiosis-specific proteins
   Others
    100051719 (HFM1)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_C ResIII AAA_22 Hfq
Other DBs
NCBI-GeneID: 100051719
NCBI-ProteinID: XP_023497444
Ensembl: ENSECAG00000024039
VGNC: 18767
Position
5:70107283..70213599
AA seq 1480 aa
MLKSNDSSFSLDNLFFEKLDDPENYPDNEKSLDWFLPPAPLISEIPDTQALEEEIESHKL
LGQEKRSKMLTSNLKITNENTNYISSIQKFQFAFPSNKYKEDDLNLGGAANNDLSHVAGK
LTYGSSQKYKNHIGTEKAPEKNVPDDTKLVDSAEDKGKCTPAFRKRLFKISDNIHESAYS
NDSANLDSHTGSVKIVETEMNKGKSWKCNTRQKPQYSDINVFTASDAVSASEIREGKAPS
FSLASQLHEFQGVTENGLDSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFV
ICAPTGSGKTVVFELAITRLLMEVPLPWSNIKIVYMAPIKALCSQRFDDWKEKFGPIGLN
CKELTGDTVMDDLFEIQHAHIIMTTPEKWDSMTRKWRDNSLVQLVRLFLIDEVHIVKDEN
RGPTLEVVVSRMKTVQSLSHTLENTSSIIPMRFVAVSATIPNAEDIAEWLSDDTRPAVCL
KMDERHRPVKLRKVVLGFPCTSNQTEFKFDLSLNYKISTVIQTYSDQKPTLVFCATRKGV
QQAASVLVKDAKFIMTVEQKQRLQKCAHSIRDSKLRDILIHGVAYHHAGMELSDRKVVEG
AFTVGDLPVLFTTSTLAMGVNLPAHLVVIKSTMHYAGGMFEEYSETDILQMIGRAGRPQF
DTTATAVIMTRLSTKEKYIQMLACSDTVESSLHRHLIEHLNAEIVLHTITDVNIALEWIR
STLLYIRALKNPSHYGFASGLNKDGIEAKLQELCLKNLNDLSSLDLIKMDEDVNFKPTEA
GRLMAWYYITFETVKKFCTISGKETLSDLVTMIASCKEFLDVQLRISEKKTLNTLNKDPN
RITIRFPMEGRIKTREMKVNCLIQAQLGCIPIQDFALTQDTSKIFRNGSRITRWLSDFVA
IQEKKFAVLLNSLILTKCFRCKLWENSLHVSKQLEKIGITLSNAMVNAGLTSFKKIEETD
ARELELILNRHPPFGTQIKETVMYLPKYELEVEQIARYSDTMAEILVTIILRNFEQLQTK
RTAPDSHYVTLIIGDADNQVVFKHKIMDSVLLKAGNWVKKVDVKRALKSEDLSINLISSE
YVGLDIQQKFTVFYLGPKRFGNQIIIRKKSETEISHSAHSDGSTVVGSNKGMTACKKPGN
RECNHHCKNKQTCGHDCCKTGVAQKSEMKETTISLYLSDLRNRNAVSSLPPVKRLKMQMN
KSQSVDLKEFGFTAKPSLPSVSRSEYLNIPELSVMEQRDQHGICAKVQQQEPSEYQDKDF
SRWNYSTISNEKAPQTVLFNRNFNASGNQNLTDVDKSNSSFSEVLNVNFELGNDVWDDFD
DENLIEVTNFSADTEKTKTSGFGNTLNSSTRGSKLSLQESKSKFQREMSNSFVSSHGKPH
VSNSSMFKFDASSMTKSPQQAGNANIVQLPERKQQSLSPEIEKLCFPHSEKISNSSNFVK
KVDFFIRNSQCKKEIEFSRYHPDDEADEMKSFLGIFDGIF
NT seq 4443 nt   +upstreamnt  +downstreamnt
atgctgaaatcaaatgactcctcattttctttggataatttgttttttgaaaagctagat
gaccctgaaaactatccagacaatgaaaaatccttggattggtttctcccacctgctcca
ttgatttcggaaattccagatactcaggcattagaagaagaaatagaaagtcataaacta
ttaggtcaggaaaagaggtcaaaaatgttaacatcaaatttgaagataactaatgaaaac
acaaattatatttcatcaatacaaaaattccaatttgccttcccttctaataaatacaaa
gaagatgatctaaatttaggaggggcagctaacaatgatttatcacatgttgctggcaag
ctgacatatggttcttctcagaaatacaaaaatcacattggcactgagaaagcacctgag
aaaaatgttccagatgatacaaaattagttgattctgcagaagataaaggaaagtgtaca
ccagccttcagaaaaagattatttaaaatatctgacaatatacatgagagtgcttattct
aacgacagtgcaaacttggattctcatactggctcagtgaaaattgtcgaaacagaaatg
aacaaagggaagtcatggaaatgtaatactaggcagaaacctcaatattcagacattaac
gtgtttacagcaagtgatgctgtttctgcttctgaaatcagagaaggcaaagcaccatct
ttttcacttgcatctcagcttcatgaatttcaaggagtaacagaaaatggtttagattcc
ttgaaagctgtcacagaaatcccggcaaaatttagaagtattttcaaagaatttccatat
ttcaactatatacagtccaaagcctttgatgatcttctttacacagatagaaactttgtg
atttgtgctccaactggttctgggaaaactgtagtatttgaactagctataacaagattg
ttaatggaagtaccattgccatggtcgaacattaaaattgtttacatggcaccaataaaa
gccttgtgtagtcagcgtttcgatgactggaaagaaaaatttggaccaataggattgaat
tgtaaagaactcacaggagatacagtaatggatgacctatttgagattcagcatgcccat
attattatgaccactccagaaaaatgggatagcatgactaggaaatggagagacaactct
ttggtccagctggttcgactgtttctcattgatgaggtgcatattgtaaaagatgaaaat
cgtggaccaactcttgaagttgtagtcagtagaatgaaaactgtgcagtctttgtctcat
actttagaaaataccagcagtattattccaatgagatttgtagctgtatctgcaacaatt
ccaaatgctgaggatattgcagaatggctttcggatgatacaagacctgctgtatgtctg
aaaatggatgagagacacagacctgttaaacttcggaaagtggtccttggatttccctgc
actagcaaccaaactgaatttaagtttgatttaagcctcaactacaaaatctccactgtt
atacaaacatactctgatcagaaacctacacttgtgttttgtgcaacaaggaaaggtgtg
caacaggctgcttctgttcttgtgaaagatgcgaaatttattatgactgtggaacagaaa
cagaggttacagaagtgtgcacattccataagagattcaaaactgagagatatcttaata
catggtgttgcttatcatcatgctggtatggaactgtcagatagaaaagtagttgaagga
gcttttactgttggagatctaccagttctttttactaccagtactttagctatgggagta
aatttgcctgctcacctagtagttataaaatctacaatgcattatgctggaggaatgttc
gaagaatacagtgaaacagatattcttcagatgattggtagagctggtcgacctcaattt
gacactacagctactgcagttattatgactcggctgagtacaaaagagaagtatattcag
atgttagcttgtagtgacactgtagaaagcagtttgcacagacatcttattgagcattta
aatgcagaaatagtattgcataccatcacagatgtgaatattgctttggaatggatacga
tcaaccttgctttatattagagccttgaaaaatccatctcattatggttttgcatctgga
ttgaacaaagatggaatcgaagcaaaattacaagaattatgtttgaagaatctgaatgac
ttatcatctctggacttgataaaaatggatgaagatgttaatttcaaaccaactgaggca
ggaagactgatggcttggtattatattacatttgagacagtgaagaaattttgtacaata
agtggaaaagaaactttatcagatctggtcacaatgatagccagctgcaaggaatttctt
gatgtgcaattgaggataagtgaaaagaaaacactgaatactttgaacaaagatccaaat
cggataactatcagatttccaatggaaggaagaattaaaacaagagaaatgaaagtaaat
tgtcttattcaggctcagctaggatgcattcccatacaagactttgctttgacacaagac
acctcaaagattttcagaaatggctcacgaattacaagatggttgtcagattttgtggct
attcaagaaaagaagtttgctgtactgttgaacagtttgattttaacgaaatgttttaga
tgtaaactttgggagaactctctgcatgtatccaaacagctggagaaaatcggtataaca
ttgtcgaatgcaatggtaaatgcaggtttgacttcctttaaaaaaatagaagaaacagat
gcaagggaacttgaactgattttaaatagacatcccccttttggaactcagataaaagaa
acagtgatgtatcttccaaaatatgaacttgaagtggaacagattgcaagatatagtgat
actatggcagaaatattagtgaccattatattaagaaactttgaacagctacagactaaa
aggacagcaccagattctcactatgttaccttaatcataggtgatgcagataatcaagtg
gtttttaagcacaaaattatggattctgttttgctaaaagctggaaattgggttaaaaag
gttgatgtgaagagagctcttaaatctgaagatcttagcataaatttaattagttctgaa
tatgttggacttgatattcagcagaaatttacagtcttttatttaggacccaagaggttt
ggaaatcaaataattattcgaaaaaaatcagaaacagagatttcccattctgcacattca
gatggatctactgtcgtaggatccaataaaggaatgactgcctgcaaaaaacctgggaac
cgagaatgtaatcatcactgtaaaaataaacaaacctgtggacatgactgctgtaaaact
ggagttgcacagaagtcagaaatgaaagagacaacaatttcattgtatttatctgattta
agaaacaggaatgctgtttcctctcttcctccggttaaacgtctcaagatgcaaatgaat
aaatctcaaagtgtggaccttaaagagtttggttttactgcaaaaccttctcttcccagc
gtatcaaggtcagaatatttaaacatacctgaattgtctgtaatggagcagagagatcag
catggaatctgtgcaaaagttcaacaacaagaaccatcggaatatcaagacaaagatttt
tccagatggaactattctacaatttcaaatgagaaagcccctcaaacagtgctcttcaac
agaaattttaatgcatctggaaaccagaatttgacagatgtggataaaagcaactcttca
ttttcagaagttttgaatgtgaactttgaattgggaaatgatgtttgggatgattttgat
gatgaaaacttaatagaagttactaacttttcagctgatactgagaagacaaaaacatca
ggatttggaaacactttgaattcaagtaccaggggaagtaagttatccctccaagagtca
aagagcaaattccaaagagaaatgtcaaacagttttgtttcatcacatgggaagccacat
gtatcaaattcttctatgttcaagtttgatgcatcctccatgacaaagtcacctcaacaa
gctggaaatgcaaatattgtccaattaccagaaagaaaacaacaaagtctgtcaccagag
attgaaaagctatgcttccctcactctgaaaaaatatcaaattcttcaaattttgttaag
aaagtggatttctttattaggaacagtcaatgtaaaaaggaaattgagttcagtaggtat
catcctgatgatgaagctgatgaaatgaagtcttttctgggaatatttgatggtattttt
taa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (31)   
   KEGG ORTHOLOGY (1)   
   RefGene (25)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   Ensembl (1)   
   OC (1)   
   VGNC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (6)   
   Pfam (6)   
All databases (48)   

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