KEGG   Escherichia coli O6 K2 H1 CFT073 (UPEC): c3916Help
Entry
c3916             CDS       T00106                                 

Gene name
deaD
Definition
(GenBank) Cold-shock DEAD-box protein A
  KO
K05592  
ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
ecc  Escherichia coli O6:K2:H1 CFT073 (UPEC)
Pathway
RNA degradation
Brite
KEGG Orthology (KO) [BR:ecc00001]
 Genetic Information Processing
  Folding, sorting and degradation
   03018 RNA degradation
    c3916 (deaD)
Enzymes [BR:ecc01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     c3916 (deaD)
Messenger RNA biogenesis [BR:ecc03019]
 Prokaryotic Type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     c3916 (deaD)
Ribosome biogenesis [BR:ecc03009]
 Prokaryotic Type
  rRNA helicases
   c3916 (deaD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif Motif
Other DBs
NCBI-ProteinID: 
UniProt: 
Position
complement(3739604..3741559)
Genome map
AA seq 651 aa AA seqDB search
MLINFMMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIP
HLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFS
KHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEA
DEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRP
DISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGD
MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGR
AGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESS
DLDQYRALLSKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDR
GPRDRNDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRY
IGNIKLFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGF
GGERREGGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq 1956 nt NT seq  +upstreamnt  +downstreamnt
ttgctgatcaatttcatgatgagttatgtagactggccgccattaattttgaggcacacg
tactacatggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatcctt
gaagcccttaacgatctgggttacgaaaaaccatctccaattcaggcagagtgtattcca
catctgctgaatggccgcgacgttctgggtatggcccagacggggagcggaaaaactgca
gcattctctctacctctgctgcagaatcttgatcctgagctgaaagcaccacagattctg
gtgctggcaccgacccgcgaactggcggtacaggttgctgaagcaatgacggatttctct
aaacacatgcgcggcgtaaacgtggttgccctgtacggcggccaacgttatgacgtgcaa
ttacgcgccctgcgtcaggggccgcagatcgttgtcggtactccgggccgtctgctggac
cacctgaaacgtggcactctggacctctctaaactgagcggtctggttctggatgaagct
gacgaaatgctgcgcatgggcttcatcgaagacgttgaaaccattatggcgcagatcccg
gaaggtcatcagaccgctctgttctctgcaaccatgccggaagcgattcgtcgcattacc
cgccgctttatgaaagagccgcaggaagtgcgcattcagtccagcgtgactacccgtcct
gacatcagccagagctactggactgtctggggtatgcgtaaaaacgaagcactggtacgt
ttcctggaagcggaagattttgatgcggcgattatcttcgttcgtaccaaaaacgcgact
ctggaagtggcagaagctcttgagcgtaacggctacaacagcgccgcgctgaacggtgac
atgaaccaggcgctgcgtgagcagacactggaacgcctgaaagatggtcgtctggacatc
ctgattgcgaccgacgttgcagcccgtggcctggacgttgagcgtatcagcctggtggtt
aactacgatatcccgatggattctgagtcttacgttcaccgtatcggtcgtaccggtcgt
gcaggtcgtgctggtcgtgcactgctgttcgttgagaaccgtgagcgtcgtctgctgcgt
aacattgaacgcaccatgaagctgaccattccggaagtagaactgccgaacgcagaactg
ctgggcaaacgtcgtctggaaaaatttgccgctaaagtacagcagcagctggaaagcagc
gatctggatcaataccgtgcactgctgagcaaaattcagccgactgccgaaggtgaagag
ctggatctcgaaactctggcagccgcactactgaaaatggcacagggtgaacgtactctg
attgttccgccagatgcgccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgt
ggtccgcgcgatcgtaacgaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgc
gaacgtcgtgatgttggcgatatgcagttgtaccgtattgaagtgggccgcgatgatggt
gttgaagttcgtcatatcgttggtgcgattgctaacgaaggcgacatcagcagccgttac
atcggtaacatcaagctgtttgcttctcactccaccatcgaactgccgaaaggtatgccg
ggtgaagtgctgcaacactttacgcgtactcgcattctcaacaagccgatgaacatgcag
ttactgggcgatgcacagccgcatactggcggtgagcgtcgtggcggtggtcgtggtttc
ggtggcgaacgtcgtgaaggcggtcgtaacttcagcggtgaacgccgtgaaggggggcgt
ggtgatgggcgtcgttttagcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgac
tctaccggtcgtcgtcgtttcggtggtgatgcgtaa

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