KEGG T00666: ECDH10B

Escherichia coli K-12 DH10B: ECDH10B_3801

Entry

ECDH10B_3801 CDS T00666

Gene name

rfaD

Definition

(GenBank) ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding

K03274

ADP-L-glycero-D-manno-heptose 6-epimerase [EC:5.1.3.20]

Organism

ecd Escherichia coli K-12 DH10B

Pathway

ecd00540	Lipopolysaccharide biosynthesis
ecd01100	Metabolic pathways

Module

ecd_M00064

ADP-L-glycero-D-manno-heptose biosynthesis

Brite

KEGG Orthology (KO) [BR:ecd00001]
Metabolism
  Glycan biosynthesis and metabolism
   00540 Lipopolysaccharide biosynthesis
    ECDH10B_3801 (rfaD)
Enzymes [BR:ecd01000]
5. Isomerases
  5.1  Racemases and epimerases
   5.1.3  Acting on carbohydrates and derivatives
    5.1.3.20  ADP-glyceromanno-heptose 6-epimerase
     ECDH10B_3801 (rfaD)
Lipopolysaccharide biosynthesis proteins [BR:ecd01005]
Unusual sugar
  ECDH10B_3801 (rfaD)

SSDB

Motif

Pfam:

Epimerase GDP_Man_Dehyd 3Beta_HSD RmlD_sub_bind NAD_binding_4 Polysacc_synt_2 KR adh_short

Other DBs

NCBI-ProteinID:

ACB04669

UniProt:

B1X953

Structure

PDB:

1EQ2 2X6T 2X86

Position

3889587..3890519

AA seq 310 aa
MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVDLNIADYMDKEDFLIQI
MAGEEFGDVEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLHYCLEREIPFLYASSAATY
GGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHKGS
MASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVSGIFNLGTGRA
ESFQAVADATLAYHKKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVT
EYMAWLNRDA

NT seq 933 nt +upstreamnt +downstreamnt
atgatcatcgttaccggcggcgcgggctttatcggcagcaacatcgttaaagccctgaat
gataaaggcatcaccgatattctggtggtggacaacctgaaagacggcaccaagtttgtg
aacctggtggatctgaatatcgcagactatatggataaggaagacttcctgatccagatt
atggctggcgaagagttcggcgatgtcgaagcgattttccacgaaggcgcgtgctcttcc
accaccgagtgggacggcaagtatatgatggataacaactatcaatactccaaggagctg
ctgcactactgcctggagcgtgaaatcccgttcctgtacgcttcttccgcagccacctac
ggcggacgcacctccgactttattgaatcccgcgagtacgaaaaaccgttgaacgtctac
ggttactcaaaattcctgtttgatgaatatgttcgtcaaatcctgcctgaagcgaactcg
cagattgttggcttccgttatttcaacgtttatggaccgcgtgaaggccataaaggcagc
atggcgagcgtcgctttccatctcaacacccagcttaacaacggtgaatcaccgaagctg
tttgaaggtagcgagaacttcaaacgcgacttcgtctatgtgggcgacgtggctgatgtg
aatctgtggttcctggaaaatggcgtttccggcatcttcaatctcggtactggtcgtgcg
gaatccttccaggcggtagctgatgctacgctggcttatcacaagaaaggccagatcgaa
tacattccgttcccggataaactgaaaggccgctatcaggcgttcactcaggcagatctg
acaaatctgcgcgcggcgggttacgacaaaccgttcaaaaccgttgctgaaggtgtaacg
gaatacatggcctggctgaatcgcgacgcataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Chemical substance (2)   
   KEGG COMPOUND (2)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (24)   

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