KEGG   Ehrlichia chaffeensis Saint Vincent: ECHSTV_0838
Entry
ECHSTV_0838       CDS       T03348                                 
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
  KO
K03723  transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]
Organism
echv  Ehrlichia chaffeensis Saint Vincent
Pathway
echv03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:echv00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    ECHSTV_0838 (mfd)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:echv03400]
    ECHSTV_0838 (mfd)
Enzymes [BR:echv01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ECHSTV_0838 (mfd)
DNA repair and recombination proteins [BR:echv03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      ECHSTV_0838 (mfd)
SSDB
Motif
Pfam: DEAD TRCF Helicase_C CarD_TRCF_RID UvrB_inter MFD_D3 RecG_dom3_C AAA_22
Other DBs
NCBI-ProteinID: AHX08945
Position
967102..970506
AA seq 1134 aa
MNNINKIFNIPQTLEPLVIIKMYIKKLIHSAIYIVNQETQLHNLASIFKFYVPNLEIIIF
PAWNSIPYKKNSPHNSVMAERIKTLYSLITRHNDNPYIIISTINAITQKVLHQNIILQSV
LKITSLQNITKNHIEDYLTNHGYSQYSIVQDIGEFATYNNIIDIFPTTYKNPIRIHLNNN
LIQSIHYFNRQTQLIDNNSSLNEVVIYPTSEIIKQKKNIDIFSKTYKTKPNQDQNLLNTI
ISGKKHIGEENFLPLFYKEELQNIFNYISQNTTLIFNDKLINEIKEYNNQIYLNYRSQLS
YQVPPPQLYVDSEEFKIITKQFHKTIFSQSDNTSNNSAYTDRNIHTSSFNITEKIQNVPN
FKTLVQNKQIDIFEILTQYIKTTCHTKKLIIACYSTGSLEYIQNRLRTLNIKLCKIENYQ
EICSSYNIAILPIYHSFISKYTIVIAEHDLLYKQETTNKSNISNIISNDTNLDIGDIVIH
KDYGIGKIVALETTKVFDSYHDFIKIEYYNNDKLFLPVENINLISKYGQQNVNVTLDKLG
STSWQQRKTKIKNHIKKIAKELLTIEAARRLSTGKSFFPDENYKHFCNEFSYTETEDQLQ
AIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNYQVAIIVPTTLLCRQHFI
VFTERFKKFPNIKIKQLSKIVARSEIKKTKESLSCGQVHIIIGTHAILAQDVTFANLSLL
IIDEEQQFGVKQKELLKKIKTNVHVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAV
TTYTTYYEETIIKDAIIREHNRGGRVFYVCPQISNIKSISDKIRKLVPEIKMNTAHGQLS
PTQLDTIMNDFFDGKFTILLTTSIIECGLDIPFANTIIIHNADMFGLAQLYQLKGRVGRS
STKGFAYFILSEKATNKSAIKLEIIQSIDSINSGFNLSLHDMDIRGFGNLVGEEQSGNIK
DIGIELYQQMLEEELNIYSEYPKDLDHINININVNIRIPEHYIQDIGLRMRVYKKIGSLK
TKEDIDNYYIELTNKFGKLPNEVENLLNTIYIKQLCANIGIYEVEQIKNSILLKIDSNTT
LKQKILNYFINNPLTFKIQNNSILMLINNSSNCIISFIIHHISKINLLNKKAIL
NT seq 3405 nt   +upstreamnt  +downstreamnt
atgaataatattaataaaatcttcaatattccacaaacgctagaaccacttgtcataata
aaaatgtatataaaaaaactaattcattctgcaatatatatagtcaatcaagaaacacaa
ctacataatctagcatcaatatttaagttttatgttccaaatcttgaaataatcatattt
cctgcatggaattcaataccatataaaaaaaattctccacataattcagttatggcagaa
agaattaaaactctatattccctaatcactagacataatgataatccctatattattatt
tcaacaattaatgcaattactcaaaaagtattacaccaaaatatcatattacaatcagta
ttaaaaattacatctctacagaatattacaaaaaaccatatagaagattacttaaccaat
cacggatacagtcaatactcaatagtacaagatataggtgaatttgccacttacaacaac
atcattgacatttttcctacaacttataaaaatcccataaggattcatttaaataataat
cttatacaatcaattcactatttcaatcgccaaacacaattaatagataataactcttct
ttaaatgaggttgttatttatcccacttctgaaataataaaacaaaaaaaaaatatagat
attttttctaaaacctataaaacaaaaccaaaccaagatcaaaacctattaaacacaata
atctctggaaagaaacacataggagaagaaaatttcttgcctttattttataaagaagaa
ttacaaaatatttttaactacatatcacaaaacacaacattaatatttaacgataagctt
ataaatgagataaaagaatataataatcagatatacctaaattacagatctcaactatcc
taccaagtgcctccacctcaactttacgttgattctgaagaatttaaaattataactaaa
cagtttcataaaactatattctcacaatctgacaacactagtaataattcagcctatacc
gatagaaatatacatacttcttccttcaacattacagaaaagatacaaaacgtcccaaat
tttaaaacattagtacaaaacaaacaaatcgacatatttgaaatattgacacaatatatc
aaaactacatgtcacacaaaaaaattaataatagcttgttactctactggctctttagaa
tatatccaaaatagacttagaacattaaatatcaaactatgcaaaatagaaaactatcag
gaaatatgctcttcatataatattgctatattaccaatatatcacagctttatctcaaaa
tatactattgtcatagcagaacacgatctattatataaacaagaaacaactaataaaagt
aacatttcaaatattattagcaatgatactaacctagatattggagatatagtaatacac
aaagactatggtattgggaaaatagtagcacttgaaactactaaagtatttgatagttat
catgatttcatcaaaatagagtactataacaacgacaaactattcttacctgtagaaaat
attaatcttatatccaagtatggacaacaaaatgtcaatgttacccttgataaactaggc
agtacatcatggcaacaacgtaaaactaaaataaaaaaccatatcaaaaaaattgcaaaa
gaattattaactatagaagcagcaagaagactctctactggcaaatcatttttccctgat
gaaaattataaacacttctgtaatgaattttcttatactgaaacagaagatcaattacaa
gccataaaagacatggaacatgatctatcaagtggtaaaataatgaatagattaatttgc
ggagacgttggctttggaaaaacggaaatagctttacgagcagcattcttagtagcaagt
caaaactaccaagtagcaattatagtaccaacaactctactgtgcaggcaacattttatt
gtttttactgaaagattcaaaaaatttcctaatattaaaatcaaacaattatctaaaatt
gttgcgagatccgaaataaaaaaaactaaagaaagtttatcatgtggacaagtacatata
ataataggaacacatgccatattagcacaggacgttacgtttgctaacttaagcctatta
attatagatgaagaacaacaatttggagtaaagcaaaaagaattactaaaaaaaatcaaa
acaaacgttcatgtaatttcactatctgcaactccaataccacggacactgtacatgtca
ctatgtggaataaaagatttgagtttaataaaaacaccaccaaaaaatagattagcagtt
acaacttatacaacatattatgaagaaactataataaaagatgctataatacgagagcat
aatagaggcggtagagtattttatgtttgtccacaaattagtaatataaaaagcatcagc
gacaagataagaaaattagtaccagaaataaaaatgaacactgcccatggacaactttcc
cctacccaacttgacacaataatgaacgatttttttgatggcaaattcacaatattactt
actacatcaattatagaatgtggattagatatcccttttgccaatacaatcataatacac
aatgccgatatgtttggattagctcaactctaccaattaaaaggaagagtaggacgtagc
agtaccaagggttttgcatattttatattatctgaaaaagcaaccaataaatctgctata
aaactggagataatacaatcaatagattctataaattcaggatttaatttatcattacat
gacatggatatcagaggatttggtaatttagtgggagaagaacaatcaggtaacataaaa
gatataggcattgaactataccaacaaatgttagaagaagaacttaacatttatagtgaa
tatcctaaagatcttgaccatataaatatcaatatcaatgttaatataagaattcctgag
cattacattcaagatataggattaagaatgcgagtatacaaaaaaattggcagtcttaaa
acaaaagaagacatagataattactatatagagttaaccaataagtttggtaaattgcca
aacgaagtagaaaacttattgaacaccatatatataaaacaactgtgtgcaaatattggc
atttatgaagtcgaacaaataaaaaacagcatccttttaaaaatagatagcaatacaact
cttaaacaaaaaattcttaattattttatcaataaccctctaacttttaagatacaaaac
aatagtatacttatgctaattaacaacagttccaattgcattataagttttattatacac
cacattagcaaaataaacctattaaacaagaaagcaatattataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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