KEGG   Escherichia coli K-12 W3110: JW3950
Entry
JW3950            CDS       T00068                                 
Symbol
rpoB
Name
(GenBank) RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
ecj  Escherichia coli K-12 W3110
Pathway
ecj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ecj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    JW3950 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecj03021]
    JW3950 (rpoB)
   03400 DNA repair and recombination proteins [BR:ecj03400]
    JW3950 (rpoB)
Enzymes [BR:ecj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     JW3950 (rpoB)
Transcription machinery [BR:ecj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     JW3950 (rpoB)
DNA repair and recombination proteins [BR:ecj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      JW3950 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_45 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 SPG4
Other DBs
NCBI-ProteinID: BAE77333
UniProt: P0A8V2
Structure
Position
complement(3451408..3455436)
AA seq 1342 aa
MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQYGLEAAFRSVFPIQ
SYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAPEGTVKDIKEQ
EVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNARIIPYR
GSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDNKLQME
LVPERLRGETASFDIEANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAGKVVAKD
YIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVDPTNDRL
SALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEIEGSGIL
SKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERAVKERLS
LGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALGPGGLTR
ERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKVTDGVVT
DEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQV
VSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKR
GGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERG
DVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVS
RDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEK
LLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDL
SEELQILEAGLFSRIRAVLVAGGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDE
LKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKIN
PIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAK
LREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMPIATPVFDGAKEAEIKELLK
LGDLPTSGQIRLYDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLG
GKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP
ESFNVLLKEIRSLGINIELEDE
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggtttactcctataccgagaaaaaacgtattcgtaaggattttggtaaacgtccacaa
gttctggatgtaccttatctcctttctatccagcttgactcgtttcagaaatttatcgag
caagatcctgaagggcagtatggtctggaagctgctttccgttccgtattcccgattcag
agctacagcggtaattccgagctgcaatacgtcagctaccgccttggcgaaccggtgttt
gacgtccaggaatgtcaaatccgtggcgtgacctattccgcaccgctgcgcgttaaactg
cgtctggtgatctatgagcgcgaagcgccggaaggcaccgtaaaagacattaaagaacaa
gaagtctacatgggcgaaattccgctcatgacagacaacggtacctttgttatcaacggt
actgagcgtgttatcgtttcccagctgcaccgtagtccgggcgtcttctttgactccgac
aaaggtaaaacccactcttcgggtaaagtgctgtataacgcgcgtatcatcccttaccgt
ggttcctggctggacttcgaattcgatccgaaggacaacctgttcgtacgtatcgaccgt
cgccgtaaactgcctgcgaccatcattctgcgcgccctgaactacaccacagagcagatc
ctcgacctgttctttgaaaaagttatctttgaaatccgtgataacaagctgcagatggaa
ctggtgccggaacgcctgcgtggtgaaaccgcatcttttgacatcgaagctaacggtaaa
gtgtacgtagaaaaaggccgccgtatcactgcgcgccacattcgccagctggaaaaagac
gacgtcaaactgatcgaagtcccggttgagtacatcgcaggtaaagtggttgctaaagac
tatattgatgagtctaccggcgagctgatctgcgcagcgaacatggagctgagcctggat
ctgctggctaagctgagccagtctggtcacaagcgtatcgaaacgctgttcaccaacgat
ctggatcacggcccatatatctctgaaaccttacgtgtcgacccaactaacgaccgtctg
agcgcactggtagaaatctaccgcatgatgcgccctggcgagccgccgactcgtgaagca
gctgaaagcctgttcgagaacctgttcttctccgaagaccgttatgacttgtctgcggtt
ggtcgtatgaagttcaaccgttctctgctgcgcgaagaaatcgaaggttccggtatcctg
agcaaagacgacatcattgatgttatgaaaaagctcatcgatatccgtaacggtaaaggc
gaagtcgatgatatcgaccacctcggcaaccgtcgtatccgttccgttggcgaaatggcg
gaaaaccagttccgcgttggcctggtacgtgtagagcgtgcggtgaaagagcgtctgtct
ctgggcgatctggataccctgatgccacaggatatgatcaacgccaagccgatttccgca
gcagtgaaagagttcttcggttccagccagctgtctcagtttatggaccagaacaacccg
ctgtctgagattacgcacaaacgtcgtatctccgcactcggcccaggcggtctgacccgt
gaacgtgcaggcttcgaagttcgagacgtacacccgactcactacggtcgcgtatgtcca
atcgaaacccctgaaggtccgaacatcggtctgatcaactctctgtccgtgtacgcacag
actaacgaatacggcttccttgagactccgtatcgtaaagtgaccgacggtgttgtaact
gacgaaattcactacctgtctgctatcgaagaaggcaactacgttatcgcccaggcgaac
tccaacttggatgaagaaggccacttcgtagaagacctggtaacttgccgtagcaaaggc
gaatccagcttgttcagccgcgaccaggttgactacatggacgtatccacccagcaggtg
gtatccgtcggtgcgtccctgatcccgttcctggaacacgatgacgccaaccgtgcattg
atgggtgcgaacatgcaacgtcaggccgttccgactctgcgcgctgataagccgctggtt
ggtactggtatggaacgtgctgttgccgttgactccggtgtaactgcggtagctaaacgt
ggtggtgtcgttcagtacgtggatgcttcccgtatcgttatcaaagttaacgaagacgag
atgtatccgggtgaagcaggtatcgacatctacaacctgaccaaatacacccgttctaac
cagaacacctgtatcaaccagatgccgtgtgtgtctctgggtgaaccggttgaacgtggc
gacgtgctggcagacggtccgtccaccgacctcggtgaactggcgcttggtcagaacatg
cgcgtagcgttcatgccgtggaatggttacaacttcgaagactccatcctcgtatccgag
cgtgttgttcaggaagaccgtttcaccaccatccacattcaggaactggcgtgtgtgtcc
cgtgacaccaagctgggtccggaagagatcaccgctgacatcccgaacgtgggtgaagct
gcgctctccaaactggatgaatccggtatcgtttacattggtgcggaagtgaccggtggc
gacattctggttggtaaggtaacgccgaaaggtgaaactcagctgaccccagaagaaaaa
ctgctgcgtgcgatcttcggtgagaaagcctctgacgttaaagactcttctctgcgcgta
ccaaacggtgtatccggtacggttatcgacgttcaggtctttactcgcgatggcgtagaa
aaagacaaacgtgcgctggaaatcgaagaaatgcagctcaaacaggcgaagaaagacctg
tctgaagaactgcagatcctcgaagcgggtctgttcagccgtatccgtgctgtgctggta
gccggtggcgttgaagctgagaagctcgacaaactgccgcgcgatcgctggctggagctg
ggcctgacagacgaagagaaacaaaatcagctggaacagctggctgagcagtatgacgaa
ctgaaacacgagttcgagaagaaactcgaagcgaaacgccgcaaaatcacccagggcgac
gatctggcaccgggcgtgctgaagattgttaaggtatatctggcggttaaacgccgtatc
cagcctggtgacaagatggcaggtcgtcacggtaacaagggtgtaatttctaagatcaac
ccgatcgaagatatgccttacgatgaaaacggtacgccggtagacatcgtactgaacccg
ctgggcgtaccgtctcgtatgaacatcggtcagatcctcgaaacccacctgggtatggct
gcgaaaggtatcggcgacaagatcaacgccatgctgaaacagcagcaagaagtcgcgaaa
ctgcgcgaattcatccagcgtgcgtacgatctgggcgctgacgttcgtcagaaagttgac
ctgagtaccttcagcgatgaagaagttatgcgtctggctgaaaacctgcgcaaaggtatg
ccaatcgcaacgccggtgttcgacggtgcgaaagaagcagaaattaaagagctgctgaaa
cttggcgacctgccgacttccggtcagatccgcctgtacgatggtcgcactggtgaacag
ttcgagcgtccggtaaccgttggttacatgtacatgctgaaactgaaccacctggtcgac
gacaagatgcacgcgcgttccaccggttcttacagcctggttactcagcagccgctgggt
ggtaaggcacagttcggtggtcagcgtttcggggagatggaagtgtgggcgctggaagca
tacggcgcagcatacaccctgcaggaaatgctcaccgttaagtctgatgacgtgaacggt
cgtaccaagatgtataaaaacatcgtggacggcaaccatcagatggagccgggcatgcca
gaatccttcaacgtattgttgaaagagattcgttcgctgggtatcaacatcgaactggaa
gacgagtaa

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