KEGG   Escherichia coli SMS-3-5 (environmental): EcSMS35_3701
Entry
EcSMS35_3701      CDS       T00672                                 
Symbol
rtcB
Name
(GenBank) RtcB protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ecm  Escherichia coli SMS-3-5 (environmental)
Brite
KEGG Orthology (KO) [BR:ecm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ecm03016]
    EcSMS35_3701 (rtcB)
Enzymes [BR:ecm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     EcSMS35_3701 (rtcB)
Transfer RNA biogenesis [BR:ecm03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    EcSMS35_3701 (rtcB)
 Prokaryotic type
   tRNA splicing ligases
    EcSMS35_3701 (rtcB)
SSDB
Motif
Pfam: RtcB DUF4514
Other DBs
NCBI-ProteinID: ACB15773
UniProt: B1LI81
Position
complement(3764385..3765611)
AA seq 408 aa
MNYELLTTENVPVKMWTKGVPVEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSV
IPTKGAIIPAAVGVDIGCGMNALRTALTAADLPENLAELRQAIEAAVPHGRTTGRCKRDK
GAWEKPPVNVDAKWAELEAGYQWLTQKYPRFLNTNNYKHLGTLGTGNHFIEICLDESDQV
WIMLHSGSRGIGNAIGTYFIDLAQKEMQETLETLPSRDLAYFMEGTEYFDDYLKAVAWAQ
LFASLNRDAMMENVVTALQSVTQKTVRQPQTLAMEEINCHHNYVQKEQHFSEEIYVTRKG
AVSARAGQYGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTKAKKLFSVEDQIRA
TAHVECRKDAEVIDEIPMAYKDIDAVMAAQSDLVEVIYTLRQVVCVKG
NT seq 1227 nt   +upstreamnt  +downstreamnt
atgaattacgaattactgaccactgaaaatgtcccggtaaaaatgtggaccaaaggcgta
ccggtagaagacgatgcgcgtcagcaactgataaatacggcgaagatgccgtttattttc
aaacatattgcggtaatgcctgatgtacatctgggtaaaggttccaccattggtagcgtg
atcccaaccaaaggagcgattattccggcggcggtgggggtagatatcggttgtggaatg
aacgcgctgcgtaccgcgttaacggcggctgacctgcctgaaaacctggcggagctgcgt
caggcgattgaagctgccgtgccgcatgggcgtaccacaggccgttgtaaacgtgataaa
ggcgcatgggaaaaaccgcctgttaacgtcgatgcgaaatgggctgagcttgaagccggt
tatcagtggttaacgcaaaaatatccgcgtttccttaataccaataactataaacacctg
ggaacgctgggaacgggtaaccactttattgaaatttgccttgatgagtcggatcaggtg
tggattatgctgcactccggttcacgcggaattggtaatgccatcgggacttactttatc
gatctggcgcaaaaagagatgcaggaaacacttgaaacgttgccatcgcgtgacctggcg
tactttatggaaggtacggaatattttgacgattacctgaaagcggtggcctgggcgcag
ctttttgccagccttaaccgcgatgcgatgatggaaaacgtggtaacggcgttgcagagc
gttacgcagaaaacggtaagacagccacaaacgctggcgatggaagagatcaactgtcac
cacaactatgtgcaaaaagaacagcactttagcgaagagatctatgtgacgcgtaaaggc
gcggtgtctgctcgtgctggtcaatatggaattattcccggttcgatgggggcgaaaagc
tttattgtccgtgggctgggaaatgaagagtcgttctgttcgtgcagccacggtgccggg
cgggtaatgagccgtactaaagcgaaaaaactgttcagtgtggaagaccaaattcgtgcc
accgcgcatgtggaatgccgtaaagatgccgaagtgatcgacgaaatcccgatggcgtat
aaagatattgatgcggtgatggcggcacaaagcgatctggtggaagttatctataccctg
cgtcaggtggtgtgcgtaaaaggataa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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