KEGG   Escherichia coli O145 H28 RM13514 (EHEC): ECRM13514_1705
Entry
ECRM13514_1705    CDS       T03010                                 
Symbol
yciR
Name
(GenBank) RNase II stability modulator
  KO
K14051  c-di-GMP phosphodiesterase Gmr [EC:3.1.4.52]
Organism
ecoo  Escherichia coli O145:H28 RM13514 (EHEC)
Pathway
ecoo02024  Quorum sensing
ecoo02026  Biofilm formation - Escherichia coli
Brite
KEGG Orthology (KO) [BR:ecoo00001]
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ECRM13514_1705 (yciR)
   02026 Biofilm formation - Escherichia coli
    ECRM13514_1705 (yciR)
Enzymes [BR:ecoo01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.4  Phosphoric-diester hydrolases
    3.1.4.52  cyclic-guanylate-specific phosphodiesterase
     ECRM13514_1705 (yciR)
SSDB
Motif
Pfam: EAL GGDEF PAS_9 PAS PAS_4 GGDEF_2 PAS_10
Other DBs
NCBI-ProteinID: AHG08386
Position
complement(1663890..1665848)
AA seq 652 aa
MYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVITSSLMMSLT
VDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEAHSAIVILDS
RGNIQRFNRLCEDYTGLNEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSGNAYEVELWI
PTRKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRN
AMQELIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQV
LARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSD
SAAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPK
ITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDK
GINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQ
FSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQLVSQSLVRAIVAVAQA
LNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA
NT seq 1959 nt   +upstreamnt  +downstreamnt
ttgtacaactttctcggatcgcacaatccatactggcggttgacggaaagcagcgatgtt
ttgcgcttttctaccaccgaaaccacagaacctgatcgtactttgcagttatctgccgaa
caggctgctcgcatcagggaaatgacggtcatcacctccagcctgatgatgagtctgacc
gtcgatgagagcgatctttctgtgcatctggtaggacgaaaaatcaataaacgggaatgg
gctggcaacgcgtctgcatggcatgacacaccggcagttgctcgtgatttatcacacggg
ctttcctttgctgagcaggtagtttctgaagcacattccgcaatagtgattctcgacagc
cgggggaatatccaacgcttcaatcggttatgtgaagattacacagggttgaacgaacac
gacgtcattgggcaaagcgtgtttaaactgtttatgagccgtcgtgaagctgcggcatcc
aggcgcaataaccgtgtattttttcgaagcggcaatgcatatgaagtcgaactgtggata
ccaacacgtaaaggccagcggctgtttctgtttcgcaataaatttgtccacagcggcagt
ggcaaaaacgagatttttttaatctgttccggcaccgacattaccgaagagcgccgcgct
caggagcgactgcgtattctggcaaataccgacagtatcaccggactgccgaatcgtaac
gcaatgcaggagttaatcgatcacgctattaatcatgcagataacaataaagttggggtt
gtgtatcttgatttggataattttaaaaaggtcaacgacgcctatgggcatttgtttggt
gaccagttattacgcgacgtgtcattggctattttaagctgtctcgaacatgaccaggtt
ttggcgcgtccgggtggcgatgagtttctggtactggcatccaacacctcacaaagcgcg
ctggaagcaatggcatcacgaattttgacccgcttacggctcccctttcgcattggttta
attgaagtttataccagctgttcagtaggtattgcactctctcccgaacatggttcggac
agcgcggctattattcgtcacgccgacacagcaatgtacacagcgaaggaaggcggacga
ggacaattttgcgtttttaccccagaaatgaatcaacgggtatttgaatatctctggctg
gataccaacttgcgtaaagcactggaaaacgatcagttggttattcactatcaaccgaaa
atcacctggcgtggcgaagtgcgcagtctggaagcactagtacgttggcagtcacctgaa
cgtgggttgattccaccgttggacttcatttcctacgccgaagagtcagggctaattgtg
cctttaggccgttgggtgattctcgatgtcgtacgccaggtggcgaagtggcgggataaa
ggcattaacctgcgagtggcggtaaacatttctgcacgtcagctcgccgatcaaaccatt
ttcaccgccctgaaacaggttctccaggaactcaattttgaatactgccctattgatgtt
gaattgacagagagttgtctgattgagaatgatgaactggcactgtctgttattcaacaa
tttagccaactaggtgcgcaagtgcatctggatgattttggtaccggctactcttcactt
tcgcaactggcgcgctttccgatcgatgccatcaaacttgaccaggtttttgttcgagat
attcacaaacaacttgtctcgcagtcactggtccgggcgatcgtcgctgtggcccaggca
ttgaatcttcaggtgatcgccgaaggtgtagagagtgcaaaggaagatgcttttttaacc
aaaaacgggatcaatgagcggcaaggatttttgtttgccaaaccgatgcccgccgtcgcc
ttcgaacgctggtataaacgctatctgaagcgcgcataa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (16)   

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