KEGG   Escherichia coli O145 H28 RM13514 (EHEC): ECRM13514_4658
Entry
ECRM13514_4658    CDS       T03010                                 
Symbol
rpoZ
Name
(GenBank) DNA-directed RNA polymerase omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
ecoo  Escherichia coli O145:H28 RM13514 (EHEC)
Pathway
ecoo03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:ecoo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    ECRM13514_4658 (rpoZ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ecoo03021]
    ECRM13514_4658 (rpoZ)
   03400 DNA repair and recombination proteins [BR:ecoo03400]
    ECRM13514_4658 (rpoZ)
Enzymes [BR:ecoo01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     ECRM13514_4658 (rpoZ)
Transcription machinery [BR:ecoo03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     ECRM13514_4658 (rpoZ)
DNA repair and recombination proteins [BR:ecoo03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      ECRM13514_4658 (rpoZ)
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: AHG11309
Position
4543971..4544246
AA seq 91 aa
MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEENDKTTVIALREIEEGLIN
NQILDVRERQEQQEQEAAELQAVTAIAEGRR
NT seq 276 nt   +upstreamnt  +downstreamnt
atggcacgcgtaactgttcaggacgctgtagagaaaattggtaaccgttttgacctggta
ctggtcgccgcgcgtcgcgctcgtcagatgcaggtaggcggaaaggatccgctggtaccg
gaagaaaacgataaaaccactgtaatcgcgctgcgcgaaatcgaagaaggtctgatcaac
aaccagatcctcgacgttcgcgaacgccaggaacagcaagagcaggaagccgctgaatta
caagccgttaccgctattgctgaaggtcgtcgttaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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