KEGG   Escherichia coli O81 ED1a (commensal): ECED1_4957
Entry
ECED1_4957        CDS       T00827                                 
Symbol
hfq
Name
(GenBank) HF-I, host factor for RNA phage Q beta replication
  KO
K03666  host factor-I protein
Organism
ecq  Escherichia coli O81 ED1a (commensal)
Pathway
ecq02024  Quorum sensing
ecq03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ecq00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ECED1_4957 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    ECED1_4957 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ecq03019]
    ECED1_4957 (hfq)
   03036 Chromosome and associated proteins [BR:ecq03036]
    ECED1_4957 (hfq)
Messenger RNA biogenesis [BR:ecq03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     ECED1_4957 (hfq)
Chromosome and associated proteins [BR:ecq03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    ECED1_4957 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: CAR10915
UniProt: B7MSJ0
Position
4918062..4918370
AA seq 102 aa
MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAIS
TVVPSRPVSHHSNNAGGGTSSNYHHGSSAQNTSAQQDSEETE
NT seq 309 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctttacaagatccgttcctgaacgcactgcgtcgggaacgtgtt
ccagtttctatttatttggtgaatggtattaagctgcaaggacaaatcgagtcttttgat
cagttcgtgatcctgttgaaaaacacggtcagccagatggtttacaagcacgcgatttct
actgttgtcccgtctcgcccggtttctcatcacagtaacaacgccggtggcggtaccagc
agtaactatcatcatggtagcagcgcgcagaatacttccgcgcaacaggacagcgaagaa
accgaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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