KEGG T00829: ECIAI39

Escherichia coli O7 K1 IAI39 (ExPEC): ECIAI39_3661

Entry

ECIAI39_3661 CDS T00829

Gene name

pnp

Definition

polynucleotide phosphorylase/polyadenylase (EC:2.7.7.8)

Orthology

K00962

polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]

Organism

ect Escherichia coli O7:K1 IAI39 (ExPEC)

Pathway

ect00230	Purine metabolism
ect00240	Pyrimidine metabolism
ect03018	RNA degradation

Module

ect_M00394

RNA degradosome

Class

Metabolism; Nucleotide metabolism; Purine metabolism [PATH:ect00230]
Metabolism; Nucleotide metabolism; Pyrimidine metabolism [PATH:ect00240]
Genetic Information Processing; Folding, sorting and degradation; RNA degradation [PATH:ect03018]

SSDB

Motif

Pfam:

RNase_PH PNPase RNase_PH_C S1 KH_1 KH_3 KH_2 S1_2 SLS DUF4172

Other DBs

NCBI-GI:

218701935

NCBI-GeneID:

7152238

UniProt:

B7NKN3

Structure

PDB:

1SRO

Position

complement(3818797..3821001)

AA seq 734 aa
MRRRSGINTSAVRYCLRKRKDITLLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDD
TAVFVTVVGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDR
PIRPLFPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYI
NDQYVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDQMLGAVVFGHEQQQVVIQ
NINELVKEAGKPRWDWQPEPVNEALNARVAALAEARLSDAYRITDKQERYAQVDVIKSET
IATLLAEDETLDENELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVLPRT
HGSALFTRGETQALVTATLGTARDAQVLDELMGERTDTFLFHYNFPPYSVGETGMVGSPK
RREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPI
KAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMDIKIEGITKE
IMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIR
ALTEETGTTIEIEDDGTVKIAATDGEKAKHAIRRIEEITAEIEVGRVYTGKVTRIVDFGA
FVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRIRLSIKEATEQSQ
PAAAPEAPAAEQGE

NT seq 2205 nt +upstreamnt +downstreamnt
atgcgcagaagatcgggtattaacaccagtgccgtaaggtactgtctaagaaagagaaag
gatattacattgcttaatccgatcgttcgtaaattccagtacggccaacacaccgtgact
ctggaaaccggcatgatggctcgtcaggctactgccgctgttatggttagcatggatgac
accgcggtattcgttaccgttgttggccagaaaaaagccaaaccaggtcaggacttcttc
ccactgaccgttaactatcaggagcgtacctacgctgctggtcgtatcccgggtagcttc
ttccgtcgtgaaggccgcccaagcgaaggcgaaaccctgatcgcgcgtctgattgaccgc
ccgattcgcccgctgttcccggaaggcttcgtcaacgaagttcaggttatcgccaccgtg
gtttctgttaacccgcaagttaacccggatatcgtcgcgatgattggtgcttccgcagca
ctgtctctgtctggtattccgttcaatggtccgattggtgctgcccgcgtaggttacatc
aatgaccagtacgtactgaacccgactcaggacgagctgaaagagagcaaactggatctg
gttgttgcgggtactgaagccgctgtactgatggttgaatctgaagctgaactgctgagc
gaagaccagatgttgggcgcagtagtgtttggtcatgaacaacagcaggttgtcattcag
aacatcaatgaactggtgaaagaagccggtaaaccgcgttgggactggcagccggagccg
gtaaacgaagcgctgaacgcgcgcgttgctgcactggctgaagctcgtctgagcgatgct
taccgcatcaccgacaaacaagagcgttatgcgcaggttgatgtcatcaaatctgaaacc
atcgcgacgctgcttgctgaagatgaaaccctggacgaaaacgaactgggtgaaattctg
cacgctatcgagaaaaacgttgttcgtagccgcgtactggcaggcgaaccgcgtatcgac
ggtcgtgaaaaagatatgattcgtggtctggatgtgcgtactggcgtgctgccgcgtact
cacggttctgcgctgttcacccgtggtgaaactcaggcgctggttaccgcaacgctgggt
actgcacgtgacgcgcaggttcttgatgaactgatgggcgaacgtactgacaccttcctg
ttccactacaacttccctccgtactccgtaggcgaaaccggcatggtcggttctccgaag
cgtcgtgaaattggtcacggtcgtctggcgaagcgcggcgtgctggcagtcatgccggat
atggacaaattcccgtacaccgtacgtgtggtgtctgaaatcaccgaatccaacggttct
tcttctatggcttccgtgtgcggcgcgtctctggcgctgatggacgcaggtgtgccgatc
aaagctgctgttgcgggtatcgcaatgggtctggtgaaagaaggcgacaactacgttgta
ctgtctgacattttgggcgacgaagatcacctgggcgatatggacttcaaagttgcgggt
tcccgcgacggtatctctgcattgcagatggatatcaaaattgaaggtatcaccaaagag
atcatgcaggttgcgctgaaccaggctaaaggtgctcgtctgcatatcctgggcgtaatg
gaacaggcgatcaacgcgccgcgcggcgatatctctgagttcgctccgcgtatccatacc
atcaagatcaacccggacaagatcaaagacgttatcggtaaaggcggctctgttatccgt
gccctgaccgaagaaaccggcaccaccatcgaaatcgaagatgacggtactgtgaagatc
gcagcgaccgacggcgagaaagcgaaacacgctattcgtcgtatcgaagagatcactgca
gaaattgaagtgggccgcgtctacactggtaaagtgacccgtatcgttgacttcggcgca
tttgttgccatcggcggcggtaaagaaggtctggtacacatctctcaaatcgctgataaa
cgcgttgagaaagtgaccgattacctgcagatgggtcaggaagtaccggtgaaagtgctg
gaagttgatcgccagggccgtatccgtctgagcattaaagaagcgactgagcagtctcaa
cctgctgcagcaccggaagctccggctgctgaacagggcgagtaa

All links

Pathway (4)   
   KEGG PATHWAY (3)   
   KEGG MODULE (1)   
Chemical substance (6)   
   KEGG COMPOUND (6)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (10)   
   Pfam (10)   
All databases (33)   

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