KEGG   Escherichia coli O7 K1 IAI39 (ExPEC): ECIAI39_3917
Entry
ECIAI39_3917      CDS       T00829                                 
Name
(GenBank) conserved hypothetical protein; putative superfamily II DNA helicase
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
ect  Escherichia coli O7:K1 IAI39 (ExPEC)
Pathway
ect03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ect00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ECIAI39_3917
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ect03019]
    ECIAI39_3917
   03400 DNA repair and recombination proteins [BR:ect03400]
    ECIAI39_3917
Enzymes [BR:ect01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     ECIAI39_3917
Messenger RNA biogenesis [BR:ect03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ECIAI39_3917
DNA repair and recombination proteins [BR:ect03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      ECIAI39_3917
SSDB
Motif
Pfam: DEAD Helicase_C ResIII RecQ_Zn_bind AAA_30 Pribosyltran MarR_2
Other DBs
NCBI-ProteinID: CAR20029
UniProt: A0A0H3MR16
Position
complement(4074430..4076526)
AA seq 698 aa
MEKHGAELLLQRMLGNTTATFREGQWEAIDAVVNQRRKLLVVQRTGWGKSAVYFIASKIF
RDRGAGPTIIISPLLALMRNQVAAAERLGITAETLNSTNREEWQRISDKLLQGEVDCLLV
SPERLANQDFIETVLYPIADRIGLLVVDEAHCISDWGHDFRPDYRRILDILRQLPANTPV
LGTTATANNRVVEDIRQQLGDIVIQRGTLARESLALDALVLGEQSSRLAWLATVIPQFSK
SGIVYTLTTRDAELVAEWLRKNGISAFAYYSGVTCEGAEDSNTAREYLEQALLANKIKVL
VATTALGMGFDKSDLGFVIHYQMPGSIVGYYQQVGRAGRAIDSAVGILLCGGEDRAIHQF
FRESAFPAEAQIHEILNVLSENDGLTLRGIEQRTNLRYGQIEKALKLLVAENPSPVVYTE
KLWRRTIVSFSPDHERINHLMNQRKSELADVESYITTKECKMQFLRRALDEPSAERCGKC
SSCLQHPLLSPDIDSGLLHAANLFIKHADLPLNLNKQVAAGAFTQYGFKGNLPAGLQGST
GRILSRWGDSGWGKQVAQEKKTGRLSDELVEACAEMVCQRWNPHPEPTWVCSVPSLRHLD
LVPDFARRLAAKLGLPFIDAIEKVVDNPPQKMQQNRFHQCQNLDGAFVITPPLMPGPALL
VDDIVDSAWTLTVLTALLRQAGCPTVYPLALASTSVKN
NT seq 2097 nt   +upstreamnt  +downstreamnt
atggaaaagcacggagctgaattgcttttacagcggatgttaggaaataccaccgctact
ttcagggaagggcaatgggaagccatagatgcagtggttaatcagcggcgaaaactgctg
gttgtacagcgcaccggctgggggaaaagtgccgtgtacttcatcgccagtaaaatcttc
cgagatcgcggcgctggcccgacaattatcatctctcctttgcttgccctgatgcgtaac
caggttgccgccgctgaacggttaggtattacggctgaaacgttgaattctacaaacagg
gaagaatggcagcgcattagcgataagttgctgcaaggtgaggtcgattgcttgctggtt
tccccggaacgtttggcaaaccaggactttatcgaaacggttttatatcctatagccgat
cgtattggcttgcttgtggtcgacgaggcgcactgcatctctgattggggccacgatttt
cgcccggattaccgacgtatattagatattttgcgccaactgcctgcgaatacccctgtt
ctgggtacaaccgcgacagcgaataaccgtgttgttgaggatatccgtcagcaattgggt
gacattgtgattcagcgtggaacgctggctcgcgaaagtttggcgcttgatgccttagtc
ttaggagaacagtcatcccgtctggcatggttagcaacggttatccctcagttttccaaa
tcgggaattgtttataccctgacgactcgcgatgctgaacttgtcgccgagtggttaagg
aaaaatggtatcagtgcatttgcttactacagcggcgtgacttgtgaaggcgcggaagat
tctaatactgccagggaatatctggagcaggcactgctggcaaataaaatcaaagtgctg
gtcgcgacgacggcattaggtatggggtttgataaatctgatttaggtttcgtcattcat
tatcagatgccggggtctattgtcggttactaccaacaggtggggcgtgccgggcgtgct
atagattccgcagttggcatattgctttgtggtggtgaagaccgcgctattcatcaattc
ttccgtgaaagcgcctttcctgcggaggcgcaaattcatgaaatactcaacgtacttagc
gagaatgacggtcttaccctacgaggcattgaacaacggacgaatcttcgttatgggcaa
atagaaaaagcactgaaattattggtagcggaaaatccatcgcctgtggtgtataccgag
aaattatggcgcagaactatcgtcagtttttctcctgatcatgaacgaattaaccatttg
atgaatcagagaaaaagtgaactggcagacgttgaaagctatatcacgaccaaggagtgc
aaaatgcaatttctgcgccgtgcactcgatgagccaagtgccgaacgttgtggtaaatgt
agcagttgtcttcagcatccgttattgtcgcccgacattgatagcggcttactccatgcg
gcaaatttatttattaaacacgctgacctgccgttaaatctcaataaacaggtggcagct
ggggcttttacgcaatacggatttaaagggaacttgcctgcgggtttacaaggatctacg
gggcgaatcctttctcgttggggagattccgggtggggaaagcaggtagcacaggagaaa
aaaacggggcgcttaagtgatgagctggtagaagcatgtgcggaaatggtttgccaacgc
tggaatccgcatcctgaaccaacctgggtatgcagcgttccttcattaaggcacctcgac
ctggttcctgattttgcccggcgactggcggcgaaacttggcttaccttttattgatgcc
attgaaaaagtcgtggacaatccaccgcagaaaatgcagcaaaaccgttttcaccagtgt
caaaatctcgacggggcgtttgtgattacccctcctttgatgccaggtccggcgttgctg
gttgacgatatcgtggattctgcatggacgctgacagttctgacagcactgttacgacag
gcaggttgcccgacggtttatcctcttgcccttgcttctacctcggtaaaaaattga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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