KEGG   Entamoeba dispar: EDI_037120
Entry
EDI_037120        CDS       T01083                                 
Name
(RefSeq) replication factor C subunit
  KO
K10756  replication factor C subunit 3/5
Organism
edi  Entamoeba dispar
Pathway
edi03030  DNA replication
edi03410  Base excision repair
edi03420  Nucleotide excision repair
edi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:edi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EDI_037120
   03410 Base excision repair
    EDI_037120
   03420 Nucleotide excision repair
    EDI_037120
   03430 Mismatch repair
    EDI_037120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:edi03032]
    EDI_037120
   03036 Chromosome and associated proteins [BR:edi03036]
    EDI_037120
   03400 DNA repair and recombination proteins [BR:edi03400]
    EDI_037120
DNA replication proteins [BR:edi03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    EDI_037120
  DNA Replication Termination Factors
   ELG1-RFC complex
    EDI_037120
Chromosome and associated proteins [BR:edi03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    EDI_037120
DNA repair and recombination proteins [BR:edi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     EDI_037120
  Check point factors
   HRAD17(Rad24)-RFC complex
    EDI_037120
SSDB
Motif
Pfam: AAA DNA_pol3_delta2 Rep_fac_C AAA_22 DNA_pol3_delta RuvB_N Rad17 AAA_14 AAA_assoc_2 AAA_18 DUF815 AAA_11 AAA_24 AAA_5 ResIII AAA_16 AAA_19 AAA_7 Mg_chelatase ATPase_2 nSTAND3 AAA_30 TniB RNA_helicase TIP49 NB-ARC AAA_2 AAA_33 IstB_IS21 AAA_3 bpMoxR
Other DBs
NCBI-GeneID: 5884601
NCBI-ProteinID: XP_001739466
UniProt: B0EMU2
AA seq 539 aa
MSLPWVEKYRPSTTDGIFGHEYILESLKQFINANQIPHMLFYGPPGTGKTTTALAIVKQL
CGTKFSALVLELNASDERGIDVVRDQIKSFASTRTLYTNCTKFIILDESDKLTKDAQNAL
RRTLEQFSANCRFIFICNEVHLITPAIQSRCAKMRFGPLSPNALTKIVENITTKEGMEID
DDAKKSIIEISKGDARSIINTLQALSMTCKQITNSTLYTMVGLPTPAQIDDIISELLSSP
YFESFTVVDNLIKAGLSLNDIIIRVVPKLIEGKLVSVLDKTARIQCLYQLSLIEQALSIG
GNERTQTAAFVAAFQLLQISSPMLKKKPKRKLKIFKIFFMAIVEKELQYIKKERFLQNKP
STMYSNPFRLQYFHNANEGPHGLTSIFLNYFFDTTIVHMAPLNPLGSFYYQLDALLEYHP
HICIGEGYGALILYHFLTNHKYDGNSVLMYLPLSLVHSIHLPSKGKHILVFDLKEVNEKN
AIKLLPQEGEINKEETDSSICLKKGNISIYLIKLNKQQFVNIEEAKTNKFTLKNVIETE
NT seq 1620 nt   +upstreamnt  +downstreamnt
atgtcactcccctgggtggaaaagtatcgtccttcaactacagatggtatatttggtcat
gagtatattcttgaatctttaaaacaatttattaatgccaaccaaatacctcatatgctt
ttttatggtccacctggcacaggtaaaactacaacagctttggctattgtaaaacaatta
tgtggaactaaattctctgcattagtactagagttgaatgcatcagacgaaagagggatt
gatgttgttagagatcaaatcaaatcatttgcatcaacacgtaccttatatactaactgt
actaaatttattatattagatgaaagcgataaattaactaaagatgctcaaaatgcactt
cgaagaacattagagcaattttctgcaaattgtagatttatttttatttgtaatgaagtt
catttaataactccagctattcaatcacgttgtgcaaaaatgagatttggtccattatcc
ccaaatgctttaacgaaaattgttgaaaatattacaacgaaggaaggaatggaaattgat
gatgatgcaaaaaagtctatcatagaaatatcaaaaggagatgctagaagtattattaat
actttacaagcattgtcaatgacttgtaaacaaattactaattcaactttatacacgatg
gttggattacctactccagcacaaatcgatgatattatttcagagttattaagttctcct
tattttgaatcttttactgttgtagataatttaattaaagctggtctttctttaaatgat
attatcattcgtgtagtacctaaattaattgaagggaaattagtctctgtcttagataaa
actgccagaattcaatgtctttaccaactttctcttattgagcaagcattatctattggt
ggaaatgaacgaactcaaacagcggcttttgtggcagcctttcaattattacaaatttca
tctccaatgttaaaaaaaaaacctaaaagaaaactcaaaatttttaaaatcttttttatg
gctatcgttgaaaaagaattacaatacattaagaaagaacgtttcttacaaaacaaacct
agtactatgtattctaatcctttcagacttcaatattttcataatgccaatgaaggacca
catggattaaccagtatatttcttaattatttttttgatactacaatagtccatatggca
ccattaaatcctttaggaagtttttattatcagttagatgctttattagaatatcaccct
catatttgcattggagaaggatatggtgctcttattttgtatcatttcttaactaatcat
aaatacgatggtaattcagtgttaatgtaccttcctttatctcttgtacattcaattcat
cttccatctaaaggtaaacacatcttagtttttgatttaaaagaagttaatgaaaaaaat
gctatcaaattacttcctcaagaaggtgaaataaataaagaagaaacagatagttcaatt
tgtttaaagaaaggaaatattagtatttatttaatcaaacttaacaaacaacaatttgtt
aatattgaagaagctaagacaaataaatttactttaaaaaatgttattgaaactgaatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (31)   
   Pfam (31)   
All databases (47)   

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