KEGG   Entamoeba dispar: EDI_112580
Entry
EDI_112580        CDS       T01083                                 
Name
(RefSeq) snrnp sm protein
  KO
K12622  U6 snRNA-associated Sm-like protein LSm3
Organism
edi  Entamoeba dispar
Pathway
edi03018  RNA degradation
edi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:edi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EDI_112580
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EDI_112580
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:edi03019]
    EDI_112580
   03041 Spliceosome [BR:edi03041]
    EDI_112580
Messenger RNA biogenesis [BR:edi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     EDI_112580
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     EDI_112580
Spliceosome [BR:edi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    EDI_112580
 Complex C
  U2 snRNP components
    EDI_112580
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 5878654
NCBI-ProteinID: XP_001733767
UniProt: B0E5U5
AA seq 99 aa
MNLSYRNVSRIKKQNIKLNISMQKTQIEEPIDLIKLSLDDNIFIKLRGGRKLKGKLRAFD
QHLNIILTDVNETYQEKTRTFPVLYVRGDLVVLISPQKE
NT seq 300 nt   +upstreamnt  +downstreamnt
atgaatttgtcgtataggaatgtctcaagaataaaaaaacaaaatataaaactaaatatt
tcaatgcaaaaaacacaaattgaagagccaattgatttaattaaattatcacttgatgat
aatatatttataaaattaagaggtggaagaaaattaaaaggaaagttaagagcatttgac
caacaccttaatattatcttaactgatgttaatgaaacatatcaagaaaaaacaagaact
tttccagtattatatgttcgtggtgatttagtagtccttatttctccacaaaaggaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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