KEGG   Enterococcus faecium Aus0085: EFAU085_02889
Entry
EFAU085_02889     CDS       T02788                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
efau  Enterococcus faecium Aus0085
Pathway
efau03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:efau00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EFAU085_02889 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:efau03021]
    EFAU085_02889 (rpoC)
   03400 DNA repair and recombination proteins [BR:efau03400]
    EFAU085_02889 (rpoC)
Enzymes [BR:efau01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EFAU085_02889 (rpoC)
Transcription machinery [BR:efau03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EFAU085_02889 (rpoC)
DNA repair and recombination proteins [BR:efau03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EFAU085_02889 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4 PRC Apocytochr_F_C
Other DBs
NCBI-ProteinID: AGS76841
Position
complement(2939805..2943458)
AA seq 1217 aa
MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIEPGNTNLEKKQLLTEREYREKREQYGQEFQAAMGAEAIKQLLD
NVDLDAEAAELKEELKSAQGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMRELVQRELASNIKNAKRKIERQEDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVQGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFRDQNEAVIAWRNGYVHLHSRIGVN
PNSLGEKPFTEWQKERTMITTVGKIIFNEIMPPEFPYLNEPTDFNLTVQTPDKYFVEAGT
DIPAHIKEQELVLPFKKKNLGNIIAEVFKRFKVTETSKMLDRMKDLGYKHSTHAGITVGI
ADISVLNEKQEIIENAHKQVETITKQFRRGLITDDERYERVIAVWNAAKDSIQQKLMEGL
EAKNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLEIQAIREGNEIIESLE
DRLVGRYTRKEVRHPETNELIIAGNQLISEDIAKQIVDAGVETVTIRSVFTCNTKHGVCK
HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGQAVITEVTGDVIDISEDPATRTKEVTIKGKTDTRTYTVPYTARMKVAEGDMIH
RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKVR
VMDPGDTDILPGTLLDIADFKDQNYNTLVSGGVPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMQRYRDMEPKEVGVASENVYSIS
DIEAQMAAEDAMNNQTK
NT seq 3654 nt   +upstreamnt  +downstreamnt
ttgatcgatgtaaataaattcgaaagtatgcaaataggtttggcttctcccgaaaaaatc
agaagctggtcttacggtgaagtaaaaaaacctgagacgattaactatcgtaccttaaaa
cctgaacgcgaagggttgttctgtgagcggatttttggtcctacaaaagactgggaatgt
gcctgcggaaaatacaaacgtatccgttataaaggaatcgtttgtgatcgatgcggagtg
gaagttactcgttcgaaagttcgccgtgaacgcatgggacatattgaattagcagctcct
gtttcacatatctggtactttaaagggattccttcacgtatgggtcttgtattagacatg
agcccacgcgctttggaagaaatcatttattttgcttcatatgtagtcatcgaaccagga
aatacgaatttagagaaaaaacaattgttgacagaacgcgaatatcgcgaaaaacgtgaa
caatatggacaagaattccaagctgctatgggtgcagaagcgattaaacaattacttgat
aatgttgatctagatgcagaagcagccgaattgaaagaagaattgaaatctgcacaagga
caaaaacgtacacgtgcaatccgccgtttggatattttagaagcattccgcgcttcagga
aatcaaccaagctggatggttatggacgttatccctgttattccaccagatttacgccca
atggttcaattagaaggtggacgttttgcaacaagtgacttgaatgatctttaccgtcgt
gtaatcaaccgtaataaccgtttgaaacgtttgttagacttgaatgcacctggaatcatc
gttcaaaatgaaaaacgtatgctgcaagaagcagtagatgcattgatcgataacggtcgt
cgcggacgtccagttactggaccaggtaaccgcccattgaaatctctttctcatatgttg
aaagggaaacaaggtcgtttccgtcaaaacttgctaggtaaacgtgtcgactactcaggt
cgttccgttatcgttgttggacctttcttgaagatgtaccaatgtggacttccaaaagaa
atggccattgaattattcaaaccattcgtgatgcgtgagcttgttcaacgcgaactagct
tcaaacatcaaaaatgcgaaacgtaaaatcgaacgtcaagaagacgaagtatgggatgtt
ttagaagacgtaatcaaggaacacccagtattgctgaaccgggcacctacgcttcaccga
cttggtatccaagcattcgaaccagttttagtacaaggacgcgcaatccgtttgcatcca
cttgtatgtgaagcttataatgccgatttcgatggagaccaaatggctgtccacgttcca
ttgaatgaagaagcacaagcagaagcacgtatgttgatgttagctgctcaaaacatcttg
aaccctaaagatggtaaaccagttgttactccttcccaagatatggttctaggtaactac
tacttgacaatggaagaagaaggacgcgaaggcgaaggaatggtcttcagagatcaaaac
gaagccgttatcgcatggcgcaacggatatgttcatttacattcacgtatcggtgtgaac
cctaactcattaggtgaaaaaccatttactgaatggcaaaaagaacgtacgatgatcaca
acagttggtaagatcatcttcaacgagatcatgcctcctgaattcccttatctgaatgaa
ccaacagacttcaacttgaccgtccaaacaccggacaaatactttgttgaagctggtact
gatattcctgcacatatcaaagagcaagaattagtattaccgttcaagaagaaaaactta
ggaaacatcatcgcagaagtcttcaaacgattcaaagtaacagaaacttctaagatgctt
gaccgtatgaaagacttagggtacaaacattcgacacatgccggtatcacagtagggatc
gctgacatcagtgtactgaatgaaaaacaagaaatcattgaaaatgcccataaacaagtt
gaaactattacaaaacaattccgtcgtggtctgatcacagatgacgaacgttatgaacgt
gtcattgctgtttggaatgctgcaaaagacagcatccaacaaaaactgatggaaggtttg
gaagcgaaaaatccaatcttcatgatgtctgattctggagctcgtggtaacatttccaac
tttacacagcttgccggaatgcgtggtttgatggccgctcctaatggtcgaatcatggaa
ttgccaatcatttcgaacttccgtgaaggactatccgtcttggaaatgtttatctcaact
cacggggctcgtaaagggatgaccgatacagccttgaagactgccgattcaggttacttg
actcgtcgtctggttgacgtggcccaagatgtaatcatccgtgaagaagattgcggtact
gaccgaggtcttgaaatccaagccatccgcgagggaaatgaaatcatcgaatcattagaa
gatcgtttagtgggacgttacacccgtaaagaagtacgtcatcctgaaacaaatgaattg
atcattgcaggaaaccaattgatttccgaagacatcgcaaaacaaatcgttgatgcaggt
gtcgaaacagtgacaatccgttctgtcttcacatgtaatacaaaacatggtgtctgcaaa
cattgttacggacgcaaccttgcaactggctctgacgttgaagtcggagaagcagttggt
acgatcgccgctcaatcaatcggtgaacctggtactcagttgacgatgcgtacattccat
acaggtggggttgccggagacgatatcactcaaggtcttcctcgtgtccaagaaatcttt
gaagcacgtaatccgaaagggcaagcagtgatcacagaagtaacaggggatgtcatcgat
atctcagaagatcctgcaacacgtaccaaagaagtaacaatcaaaggaaaaacagataca
cgtacgtatactgttccttatacagcacgtatgaaagtagcagaaggcgatatgatccac
cgtggtgcaccattgacagaaggatcaatcgatccaaaacaattgttgcaagttcgcgat
gtattatctgttgaaaactacttgcttcgtgaagtacaacgtgtttaccgtatgcaaggg
gtagaaatcggcgacaagcatatcgaagtaatggttcgtcaaatgctgcgtaaagttcgt
gtaatggatccaggtgatacagatatcttaccaggtacattattagacatcgcagacttt
aaagatcaaaactacaatacgctagtctcaggaggcgttcctgcaacttctcgacctgtc
ttactaggtatcacaaaagcatcattagaaacaaatagtttcttatctgctgcatcattc
caagaaacaactcgtgtcttgacggatgctgcgatccgcggtaagaaagatcctcttctt
ggtttgaaagaaaatgttattataggtaagatcatcccagctggtactggtatgcaacgt
tatcgtgacatggaaccaaaagaagtcggtgtagcaagcgaaaatgtctacagtatttca
gatattgaagcgcaaatggctgcagaagacgcaatgaacaatcaaacaaaatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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