KEGG   Enterococcus faecium Aus0004: EFAU004_02831
Entry
EFAU004_02831     CDS       T01772                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
efc  Enterococcus faecium Aus0004
Pathway
efc03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:efc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    EFAU004_02831 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:efc03021]
    EFAU004_02831 (rpoC)
   03400 DNA repair and recombination proteins [BR:efc03400]
    EFAU004_02831 (rpoC)
Enzymes [BR:efc01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     EFAU004_02831 (rpoC)
Transcription machinery [BR:efc03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     EFAU004_02831 (rpoC)
DNA repair and recombination proteins [BR:efc03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      EFAU004_02831 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_2 RNA_pol_Rpb1_4 PRC Apocytochr_F_C
Other DBs
NCBI-ProteinID: AFC64911
Position
complement(2900137..2903790)
AA seq 1217 aa
MIDVNKFESMQIGLASPEKIRSWSYGEVKKPETINYRTLKPEREGLFCERIFGPTKDWEC
ACGKYKRIRYKGIVCDRCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGIPSRMGLVLDM
SPRALEEIIYFASYVVIEPGNTNLEKKQLLTEREYREKREQYGQEFQAAMGAEAIKQLLD
NVDLDAEAAELKEELKSAQGQKRTRAIRRLDILEAFRASGNQPSWMVMDVIPVIPPDLRP
MVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPGIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPFLKMYQCGLPKE
MAIELFKPFVMRELVQRELASNIKNAKRKIERQEDEVWDVLEDVIKEHPVLLNRAPTLHR
LGIQAFEPVLVQGRAIRLHPLVCEAYNADFDGDQMAVHVPLNEEAQAEARMLMLAAQNIL
NPKDGKPVVTPSQDMVLGNYYLTMEEEGREGEGMVFRDQNEAVIAWRNGYVHLHSRIGVN
PNSLGEKPFTEWQKERTMITTVGKIIFNEIMPPEFPYLNEPTDFNLTVQTPDKYFVEAGT
DIPAHIKEQELVLPFKKKNLGNIIAEVFKRFKVTETSKMLDRMKDLGYKHSTHAGITVGI
ADISVLNEKQEIIENAHKQVETITKQFRRGLITDDERYERVIAVWNAAKDSIQQKLMEGL
EAKNPIFMMSDSGARGNISNFTQLAGMRGLMAAPNGRIMELPIISNFREGLSVLEMFIST
HGARKGMTDTALKTADSGYLTRRLVDVAQDVIIREEDCGTDRGLEIQAIREGNEIIESLE
DRLVGRYTRKEVRHPETNELIIAGNQLISEDIAKQIVDAGVETVTIRSVFTCNTKHGVCK
HCYGRNLATGSDVEVGEAVGTIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRVQEIF
EARNPKGQAVITEVTGDVIDISEDPATRTKEVTIKGKTDTRTYTVPYTARMKVAEGDMIH
RGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHIEVMVRQMLRKVR
VMDPGDTDILPGTLLDIADFKDQNYNTLVSGGVPATSRPVLLGITKASLETNSFLSAASF
QETTRVLTDAAIRGKKDPLLGLKENVIIGKIIPAGTGMQRYRDMEPKEVGVASENVYSIS
DIEAQMAAEDAMNNQTK
NT seq 3654 nt   +upstreamnt  +downstreamnt
ttgatcgatgtaaataaattcgaaagtatgcaaataggtttggcttctcccgaaaaaatc
agaagctggtcttacggtgaagtaaaaaaacctgagacgattaactatcgtaccttaaaa
cctgaacgcgaagggttgttctgtgagcggatttttggtcctacaaaagactgggaatgt
gcctgcggaaaatacaaacgtatccgttataaaggaatcgtttgtgatcgatgcggagtg
gaagttactcgttcgaaagttcgccgtgaacgcatgggacatattgaattagcagctcct
gtttcacatatctggtactttaaagggattccttcacgtatgggtcttgtattagacatg
agcccacgcgctttggaagaaatcatttattttgcttcatatgtagtcatcgaaccagga
aatacgaatttagagaaaaaacaattgttgacagaacgcgaatatcgcgaaaaacgtgaa
caatatggacaagaattccaagctgctatgggtgcagaagcgattaaacaattacttgat
aatgttgatctagatgcagaagcagccgaattgaaagaagaattgaaatctgcacaagga
caaaaacgtacacgtgcaatccgccgtttggatattttagaagcattccgcgcttcagga
aatcaaccaagctggatggttatggacgttatccctgttattccaccagatttacgccca
atggttcaattagaaggtggacgttttgcaacaagtgacttgaatgatctttaccgtcgt
gtaatcaaccgtaataaccgtttgaaacgtttgttagacttgaatgcacctggaatcatc
gttcaaaatgaaaaacgtatgctgcaagaagcagtagatgcattgatcgataacggtcgt
cgcggacgtccagttactggaccaggtaaccgcccattgaaatctctttctcatatgttg
aaagggaaacaaggtcgtttccgtcaaaacttgctaggtaaacgtgtcgactactcaggt
cgttccgttatcgttgttggacctttcttgaagatgtaccaatgtggacttccaaaagaa
atggccattgaattattcaaaccattcgtgatgcgtgagcttgttcaacgcgaactagct
tcaaacatcaaaaatgcgaaacgtaaaatcgaacgtcaagaagacgaagtatgggatgtt
ttagaagacgtaatcaaggaacacccagtattgctgaaccgggcacctacgcttcaccga
cttggtatccaagcattcgaaccagttttagtacaaggacgcgcaatccgtttgcatcca
cttgtatgtgaagcttataatgccgatttcgatggagaccaaatggctgtccacgttcca
ttgaatgaagaagcacaagcagaagcacgtatgttgatgttagctgctcaaaacatcttg
aaccctaaagatggtaaaccagttgttactccttctcaagatatggttctaggtaactac
tacttgacaatggaagaagaaggacgcgaaggcgaaggaatggtcttcagagatcaaaac
gaagccgttatcgcatggcgcaacggatatgttcatttacattcacgtatcggtgtgaac
cctaactcattaggtgaaaaaccatttactgaatggcaaaaagaacgtacgatgatcaca
acagttggtaagatcatcttcaacgagatcatgcctcctgaattcccttatctgaatgaa
ccaacagacttcaacttgaccgtccaaacaccggacaaatactttgttgaagctggtact
gatattcctgcacatatcaaagagcaagaattagtattaccgttcaagaagaaaaactta
ggaaacatcatcgcagaagtcttcaaacgattcaaagtaacagaaacttctaagatgctt
gaccgtatgaaagacttagggtacaaacattcgacacatgccggtatcacagtagggatc
gctgacatcagtgtactgaatgaaaaacaagaaatcattgaaaatgcccataaacaagtt
gaaactattacaaaacaattccgtcgtggtctgatcacagatgacgaacgttatgaacgt
gtcattgctgtttggaatgctgcaaaagacagcatccaacaaaaactgatggaaggtttg
gaagcgaaaaatccaatcttcatgatgtctgattctggagctcgtggtaacatttccaac
tttacacagcttgccggaatgcgtggtttgatggccgctcctaatggtcgaatcatggaa
ttgccaatcatttcgaacttccgtgaaggactatccgtcttggaaatgtttatctcaact
cacggggctcgtaaagggatgaccgatacagccttgaagactgccgattcaggttacttg
actcgtcgtctggttgacgtggcccaagatgtaatcatccgtgaagaagattgcggtact
gaccgaggtcttgaaatccaagccatccgcgagggaaatgaaatcatcgaatcattagaa
gatcgtttagtgggacgttacacccgtaaagaagtacgtcatcctgaaacaaatgaattg
atcattgcaggaaaccaattgatttccgaagacatcgcaaaacaaatcgttgatgcaggt
gtcgaaacagtgacaatccgttctgtcttcacatgtaatacaaaacatggtgtctgcaaa
cattgttacggacgcaaccttgcaactggctctgacgttgaagtcggagaagcagttggt
acgatcgccgctcaatcaatcggtgaacctggtactcagttgacgatgcgtacattccat
acaggtggggttgccggagacgatatcactcaaggtcttcctcgtgtccaagaaatcttt
gaagcacgtaatccgaaagggcaagcagtgatcacagaagtaacaggggatgtcatcgat
atctcagaagatcctgcaacacgtaccaaagaagtaacaatcaaaggaaaaacagataca
cgtacgtatactgttccttatacagcacgtatgaaagtagcagaaggcgatatgatccac
cgtggtgcaccattgacagaaggatcaatcgatccaaaacaattgttgcaagttcgcgat
gtattatctgttgaaaactacttgcttcgtgaagtacaacgtgtttaccgtatgcaaggg
gtagaaatcggcgacaagcatatcgaagtaatggttcgtcaaatgctgcgtaaagttcgt
gtaatggatccaggtgatacagatatcttaccaggtacattattagacatcgcagacttt
aaagatcaaaactacaatacgctagtctcaggaggcgttcctgcaacttctcgacctgtc
ttactaggtatcacaaaagcatcattagaaacaaatagtttcttatctgctgcatcattc
caagaaacaactcgtgtcttgacggatgctgcgatccgcggtaagaaagatcctcttctt
ggtttgaaagaaaatgttattataggtaagatcatcccagctggtactggtatgcaacgt
tatcgtgacatggaaccaaaagaagtcggtgtagcaagcgaaaatgtctacagtatttca
gatattgaagcgcaaatggctgcagaagacgcaatgaacaatcaaacaaaatag

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