KEGG   Eucalyptus grandis (rose gum): 104442756
Entry
104442756         CDS       T03547                                 
Name
(RefSeq) general negative regulator of transcription subunit 3 isoform X1
  KO
K12580  CCR4-NOT transcription complex subunit 3
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    104442756
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egr03019]
    104442756
Messenger RNA biogenesis [BR:egr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     104442756
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     104442756
SSDB
Motif
Pfam: Not3 NOT2_3_5_C DUF5965
Other DBs
NCBI-GeneID: 104442756
NCBI-ProteinID: XP_010054454
Position
1:40688283..40700261
AA seq 878 aa
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEAELKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWLNTVVGELETQIDIFEAEVEGLSVKKGKTKPARLTHLETSITRHKA
HILKLELILRLLDNDELSPDQVNDVKEFLDDYVERNQDDFDEFSDVEELYSTLPLDKVES
LEELVTIGPPGLIKATPLGLKTSLTATASQPTVGTTTTASHQQVTPAQEQVEELSSLDGS
SDVPTKMPPAKINVVVSPSAAPAGQAIPVASNIPSHSVTGASTTTAGVPSVRGTSEIAGA
SSSTAGLASPIKEEENGNHPARRSSPALADAGLVRGIGKGPLSSQTLSNLPLSSNSVSSN
AALGAVPSASDMAKRNILGADDRLGSSGLVQPPVSPFGNRQVLPQSMKANDGSALVDPAS
GVDNTAIASRVFSPPVVSNMPWRPGSSFPQNEAVQLRGRTEIAPDQREKFLQRLQQVQQQ
GHSNILGMPPLAGGNHKQFSPQQQNPLLPQFNAPTASVAPQGGLGLGLQTPGVNGAVAAT
IQQPSPIQQSSPQGTGLAKLEEQQQQQNMPDDSTAEPASVTGIGKSTNDDDLKSPRPLDA
SAGAAASFTEPSQVPRDTDLSPGQPLLSAQPSASLGVIGRKSVSDLGAIGDYLSGSTVST
NSGGMQDQLYNLQMLEAAYHRLPQPKDSERLRSYVPRHPTMTPPSFPQVQAPLVNNPLFW
ERLGPDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHKKYNTWFQRHEEPQIATDEFEQGT
YVYFDFHVSNDDLKHGWCQRIKTEFRFEYNYLEDELMS
NT seq 2637 nt   +upstreamnt  +downstreamnt
atgggagccagccggaaacttcagggagagatcgacagagtgctgaagaaggtccaggag
ggcgtcgacgtcttcgacagcatctggaacaaggtttacgacacggacaatgcgaaccag
aaggagaagttcgaggcggaactgaagaaggagattaagaagctgcagaggtacagggac
cagatcaagacgtggatacagtccagcgaaatcaaggacaagaaggttagtgcctcttat
gagcaggctctggtggatgcacgcaagcttattgagcgcgaaatggagagatttaagatc
tgcgaaaaggagactaaaacaaaagcattctctaaggaagggctgggtcaacaaccaaaa
actgatccaagagagaaggctaaatcagaaactagggactggttgaacacagtggttggg
gaattggaaacccagattgatatctttgaagctgaggttgaggggctatctgttaagaaa
ggaaaaacaaaacctgccagattgacacatttagagacatctattactcggcacaaggct
catatattaaagttggaactgattttgagacttttggataatgatgaattgagtcctgac
caggtcaatgatgttaaggagttcttggatgattatgttgaacgtaatcaggacgatttt
gacgaattcagtgatgttgaggaactctatagcacattaccattagataaggttgaatct
cttgaagaattggtaaccattggtcctcctggtctcatcaaggcaacacctctaggctta
aagacttctctgactgcaacagcatctcaaccaacagtagggaccactaccacggccagt
caccaacaagttacaccagcccaggaacaagttgaggagttgagctctcttgatggcagt
tctgatgttcccacaaaaatgccacctgcgaaaattaatgtagtggtctctccatcagca
gcacctgctggtcaggccatacctgttgcatccaatattccttctcatagcgtgacggga
gcatcaactacgacggcaggtgtaccttctgttcgaggtacttccgaaattgcaggtgct
tctagttcaactgcaggccttgctagtccaattaaagaagaggaaaatgggaaccatcct
gcccgtagatcatctccggctttagctgatgctggacttgttagaggaataggaaagggt
cctctatccagccaaacattatccaatcttcccctatcaagtaattctgtatctagcaat
gcagcccttggtgcagttccttctgcttctgacatggcaaagaggaatattttaggagct
gatgatagactcggtagcagtggcttggtgcagcctccagtatccccgtttggtaacaga
caggttttgccacaaagcatgaaggctaacgacggaagcgccttagttgatcctgctagt
ggtgttgacaacacagcaatagccagccgagtattttcgcctcctgtagtgtccaatatg
ccgtggaggcctggaagttcctttcctcagaatgaagcggtgcagttgcgaggaagaact
gaaatagcacctgaccagagggagaaatttttgcaacggctccaacaagtacaacagcag
ggacacagcaacattctgggcatgcctccgctggcaggaggaaaccataagcagttctct
ccacagcagcaaaacccactcttgccacagttcaatgctccaaccgcatcagttgctcct
caaggtggtcttggattaggattacagacaccaggtgttaatggtgcagtggctgccact
attcaacaaccaagtcccatccaacagtctagtccacaaggaactggccttgctaaactg
gaggagcagcagcaacagcagaatatgcccgatgattcaactgctgagcctgcttctgtt
actggaattggcaagagcacgaatgatgatgatttgaaatctccacgcccattagatgct
tctgctggagcagctgcttctttcactgagccttctcaagtgcctagggatactgaccta
tctcctggacaacctctgctgtccgctcaaccttctgcaagccttggtgtcattgggcgg
aagagtgtttctgatcttggtgctataggagattatctcagtggatcaactgttagtact
aatagtggaggaatgcaggatcagttatacaatctccaaatgcttgaggctgcatatcac
agacttcctcaacccaaggactctgaacggctgaggagctacgttccgagacaccctact
atgacacctcctagctttcctcaagtacaggcaccacttgtcaataaccctctcttttgg
gaaagattaggtcctgatacacttttctttgcgttttactatcagcagaacacctatcaa
cagtatttagctgcaaaagagttgaaaaagcaatcttggagatatcacaagaaatacaat
acatggtttcagcggcatgaggagccgcagattgcaactgatgaattcgagcaaggaact
tatgtctattttgatttccatgtttcaaatgatgacctaaaacatggatggtgtcaaagg
atcaagactgagttcagattcgagtataactaccttgaagacgaattgatgtcgtaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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