KEGG   Eucalyptus grandis (rose gum): 104448757
Entry
104448757         CDS       T03547                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
egr  Eucalyptus grandis (rose gum)
Pathway
egr03020  RNA polymerase
egr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:egr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    104448757
  09124 Replication and repair
   03420 Nucleotide excision repair
    104448757
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:egr03021]
    104448757
   03400 DNA repair and recombination proteins [BR:egr03400]
    104448757
Enzymes [BR:egr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     104448757
Transcription machinery [BR:egr03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     104448757
DNA repair and recombination proteins [BR:egr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      104448757
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-GeneID: 104448757
NCBI-ProteinID: XP_039171608
Position
6:complement(18902021..18909032)
AA seq 1789 aa
MDIRFPFSPAEVAKVRTVQFGILCPDEIVIPPASLRRLFSGPRQMSVVRIEHGESMERGK
PKLGGLSDPRLGTVDRKLKCETCMANMAECPGHFGHLELAEPMFHIGFMKTVLSIMRCVC
FSCSKILVDEVLARPCVMVIGAYISDFLQEDHKFKQALRITNPKNRLKKILDACKNKSKC
EGGDEIDVQGRGSEEPVKKSRGGCGAQQPKLTIEGMKMIAEYKARRKENDDQDQLREPVE
RKQTLPAERVLGVLKRISDEDCWLLGLNPKYARPEWMILQVLPIPPPPVRPSVMMDTSSR
SEDDLTHQLATIIRHNENLRRQERNGAPAHIILEFAQLLQFHIATYFDNELPGQPRATQR
SGRPIKSICSRLKAKEGRIRGNLMGKRVNFSARTVITPDPTINIDELGVPWSIALNLTFP
ETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKVER
HLNDGDVVLFNRQPSLHKMSIMGHRIKLMPYSAFRLNLSVTSPYNADFDGDEMNMHVPQS
FETRAEVMELMMVPKCIVSPQSNRPVMGIVQDALLGCRKITKRDTFIEKDVFMNVLMWWE
DFDGKVPTPAILKPRPLWTGKQVFNLIIPKQINLLRNSAWHSESEPGFITPGDTQVRIEX
GELLSGTLCKKTLGTSTGSLIHVIWEEVGPDAAQKFLGHTQWLVNYWLLQNGFSIGIGDT
IADAATMEKINEAISSAKDEVKRLIKETQENKLEPEPGRTMMESFENKVNQVLNKARDDA
GSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTK
DDYGPESCGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIM
VKYDGTVRNSLGDVIQFLYGEDGMDAIWIESQKLDSLKMKKSEFDRVFRYEMDDETWNPD
YMLPENADDLRSIVELRDVYEAEVQKLEADRYQLGTEIATTGDNTWPLPVNLKRIIWNAQ
KTFKIDLRRPSDIHPLEVVEAIDKLQERLKVVTGEDPLSVEAQKNATLFFNILLRSTFAS
KRVLKEYRLTREAFDWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAG
VSAKNVTLGVPRLREIINVAKKIKTPSLSVYLKPEVNKTKESAKSVQCALEYTTLRSVTQ
ATEVWYDPDPTSTIIEEDVDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMA
DIAGKINLEFDDDLNCIFSDDNADKLILRIRIMNDEAVKRELNDESAEDDVFLKKIESNM
LTEMALRGIPDINKVFIKNGKINKFNENDGFKPETEWMLDTEGVNLLAVMCHEGVDATKT
TSNHLIEIIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRH
GINRNGTGPLMRCSFEEAVDILLDAAVYAESDYLKGVTENIMLGQLAPIGTGDCALYLND
EMSKHAFELQLPSYMDGLDFGTTPARSPISGTPYHGGVMSPSYLLSPNLRLTPTTDAQFS
PYVGGMAFSPASSPGYSPPSTGYRPSSPGYAPMPPGYRPTSLGYSPTSPNYSPSSPVYIP
SSTGYSPSSPGYSPTSLVYSPTSPNYSPSSPVYIPSSTGYSPSSPVYSPTSLVYSPTSPN
YSPSSPGYIPSSTGYSPSSPGYSATSLVYSSTSPTYSPSSPVYSPASHAYSPASPSYSPT
SPYYSPTSPTNSPLSQSSIPSPPSYSPTSPGYSPTSPAYSPASGISPAA
NT seq 5370 nt   +upstreamnt  +downstreamnt
atggatatccggttccctttctcgccggcggaggtcgccaaggtccggacggtccagttc
ggcatcctttgccccgacgagatcgtaattccccccgcctccctccgtcgtttgttttcg
gggcccaggcaaatgtcggtggtgcggatcgagcacggcgagtcgatggagaggggcaag
ccgaagctcggcgggctcagcgatccccgcctcggcacggtggataggaagttgaagtgc
gagacgtgcatggcgaacatggccgagtgccccgggcactttggccacctggagctggcg
gagccgatgtttcatatcgggttcatgaagaccgtgttgagtatcatgcgctgcgtttgc
ttcagttgctccaagatactcgtggatgaggtacttgcgaggccttgtgtcatggtaatt
ggtgcttacatttcggacttcttgcaggaagaccacaagttcaaacaggcccttcgaata
acaaatcctaaaaatcggcttaagaagatactagatgcgtgtaaaaacaaatcgaaatgt
gaaggtggagatgagattgatgtacaaggtcgaggctcggaagagccagtgaaaaagagt
cgtggcggatgtggagcccagcagccgaagcttactattgaaggaatgaaaatgatagca
gagtataaggcccggcggaaggaaaatgatgatcaggatcagcttcgtgaaccggtggaa
aggaaacagacattacctgctgaaagggtacttggtgtcctcaagagaataagcgatgaa
gactgctggctgctaggcctgaacccgaaatatgctcgtccggaatggatgattttacaa
gttctacctattcctccacctcctgtgaggccctctgtgatgatggacacctcttccagg
agtgaggatgatctgacgcatcaattggcaacgattataagacataatgagaatctaagg
cgacaggagaggaatggtgcaccagcacatatcatattggagtttgcacagttgctgcaa
ttccacatcgctacatactttgacaacgagttgcctgggcagccaagggctacccaacgg
tctgggagacctattaagtcaatctgcagcaggcttaaggcaaaggaaggccggataaga
gggaatctcatgggaaaaagagtcaacttttccgctcgaacagtcattacacctgatcca
actattaatattgatgaacttggcgtcccttggagtattgccttgaatcttacatttcca
gaaaccgtgactccttataacattgagaggttgaaggagcttgttgaatatgggcctcat
ccgccacctggtaaaactggggctaaatatattataagggatgacggacagagactcgat
ctccgctatttgaagaaaagtagcgatcatcatttggaactaggctacaaggtggagcga
cacttgaatgatggagacgttgtgctattcaatcgccagcctagtcttcataaaatgtct
ataatgggtcacagaattaagctcatgccatactcggcttttcgtctaaatttatctgta
acttcaccatacaatgctgattttgatggagatgaaatgaatatgcacgtgcctcagtct
tttgaaaccagagcagaagttatggagctgatgatggtgcctaagtgtattgtttcgcct
caaagtaatagaccagtgatgggaattgtccaggatgcactcctaggttgtcgtaaaatc
acaaagagggatacttttattgagaaggatgtttttatgaacgtcttgatgtggtgggag
gattttgatgggaaagttcccactcctgctattttgaagcccaggcctctttggacagga
aagcaagtgttcaatctcatcatacccaagcagatcaatctcttgagaaattcagcatgg
cactcggagtctgaaccaggatttataactccaggagatactcaagttcgaattgagnaa
ggggagttactttcgggaactctttgcaagaagacacttgggacatctacgggaagtctc
attcacgtcatctgggaagaggttggcccagatgcagcccagaaattcttgggacatact
cagtggcttgtcaactattggcttttgcagaatggtttcagcattggcattggagataca
attgctgatgccgcaacaatggaaaaaattaatgaggccatttcttcagctaaagatgaa
gtgaaaaggcttataaaagaaactcaggagaataagttagagccagaacctggacgaaca
atgatggaatcctttgaaaacaaagtgaatcaggtgttgaacaaggctcgagatgatgct
ggaagtagtgcccaaaagagtttatctgagagtaacaatctcaaagcaatggttactgct
ggatctaagggaagtttcatcaatatttctcagatgactgcttgtgttggtcagcagaat
gttgagggtaagcggatcccgtttggattcatcgatcgaactctgccccatttcacaaaa
gatgattatgggccagaaagttgtggatttgtcgagaactcgtatcttcgtgggttgact
ccacaggagttctttttccatgctatgggtggtagggaaggtctgattgatactgctgtc
aagacttctgagactggatatatccagaggcgattagtgaaggctatggaggatattatg
gtcaaatatgatggaacggttaggaactctttgggagatgttatacagtttttgtatggt
gaagacggcatggatgccatctggattgaatcacagaaactggactctttgaaaatgaag
aagtcagaatttgatagagttttcagatatgagatggatgatgaaacctggaaccctgat
tacatgttgcctgaaaacgctgatgatctgagatcaattgtagaattgagagatgtctat
gaggctgaagttcaaaaacttgaagccgatagataccagcttggaacagagattgcaact
acaggtgataacacttggccattacctgtcaacctcaagaggattatttggaatgcccag
aagacttttaaaattgacttaaggaggccttcggatattcaccccctggaggttgtggag
gctattgataagcttcaagagaggcttaaggttgttaccggtgaggatccattgagtgtt
gaagctcaaaagaacgcgactctctttttcaatatcttacttcgcagcacttttgctagc
aagagagtgttgaaggagtatcggcttactcgcgaagcttttgactgggtgattggtgag
attgaatcacgtttcttgcagtcattagtggctccaggggaaatgattggttgtgttgct
gcacagtctatcggcgagcctgccacccagatgactctcaataccttccactacgctggc
gtgagtgcgaagaacgtcactcttggtgttcctaggttgagagaaatcatcaacgttgct
aaaaaaattaagacgccctccctctctgtctatctgaaacctgaggtaaacaagacgaag
gaaagtgccaagagtgttcaatgtgccttggagtacactactctccgcagtgtaacccaa
gccactgaagtgtggtatgatccagaccccacgagcacaataattgaagaggatgttgat
tttgtcaaatcttactatgaaatgccggatgaagagatcgcccctgaaaagatctctcct
tggttgcttcgcatagagttgaatcgggaaatgatggtggataagaagcttagcatggct
gatattgcagggaagatcaatctggaatttgatgatgatttgaactgtatattcagtgat
gacaatgccgataagctcattcttcgcattcgtatcatgaatgatgaagctgtgaaaagg
gagctcaatgatgaatctgcagaagatgatgtcttcttgaagaagattgagagcaacatg
ctcacagaaatggctcttcgagggatcccagatattaacaaggtgtttatcaagaatgga
aaaataaacaaattcaatgagaatgatggcttcaagccagaaaccgagtggatgttagat
actgaaggtgttaaccttttagctgtcatgtgtcatgaaggagttgatgccacaaagacg
acgagcaatcatctaatagaaatcattgaagttcttggtatcgaggcagttcgccgctcc
ttactggatgaactgcgtgttgtcatatcatttgacggatcttatgtgaattaccggcat
ctggctattttgtgtgataccatgacctatcgaggccatttgatggccattacacgtcat
ggcatcaatcgaaatggtaccgggccactgatgagatgctcatttgaagaagccgtggat
attcttctcgatgctgctgtctatgccgaatcagattatctgaagggcgtgacggagaac
atcatgttgggtcagcttgcacccattggcacaggagactgcgcattgtacctcaatgat
gaaatgtcgaagcatgccttcgagcttcagctgcctagttatatggatggccttgatttc
ggcacgactccggcacgttcaccaatctctggaactccttaccatggaggtgtgatgtct
ccaagttatttgctgagcccaaacctccggctcactccaactacagatgctcagttctct
ccctatgttggtggtatggccttctcgcctgcttcatctccagggtatagccctccttct
accggatacaggccctcgtcgccaggatacgccccgatgccaccaggttaccgccccact
tcacttgggtacagccccacatctccaaactacagtcctagttctcctgtttatatccct
tcttctactggatacagtccctcgtcgccgggatacagcccgacgtcactggtttacagc
cccacatctccaaactacagtcccagttctcctgtttatatcccttcttctactggatac
agtccctcgtcgccggtatacagcccgacgtcactggtttacagccccacatctccaaac
tacagtcccagttctcctggttatatcccttcttctactggatacagtccctcgtcgccg
ggatacagcgcgacgtcactggtttacagctccacatctccaacctacagtcccagttct
cctgtttatagcccagccagtcatgcgtattctcctgcaagcccttcgtattcacccact
tcgccatattatagccctacttctccaactaatagccctctctcccagagctccatcccc
tctcctccaagttacagcccaacctctcctggttatagccccacatcgcctgcgtatagc
cccgccagcggcatttcaccggcggcatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (78)   
   KEGG ORTHOLOGY (1)   
   RefGene (74)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (95)   

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