KEGG   Elaeis guineensis (African oil palm): 105035271
Entry
105035271         CDS       T03921                                 
Name
(RefSeq) protein CLP1 homolog
  KO
K14399  polyribonucleotide 5'-hydroxyl-kinase [EC:2.7.1.78]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105035271
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:egu03019]
    105035271
Enzymes [BR:egu01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.1  Phosphotransferases with an alcohol group as acceptor
    2.7.1.78  polynucleotide 5'-hydroxyl-kinase
     105035271
Messenger RNA biogenesis [BR:egu03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     105035271
SSDB
Motif
Pfam: CLP1_P Clp1 CLP1_N nSTAND3 SRPRB AAA_22 AAA_24 ATP_bind_1
Other DBs
NCBI-GeneID: 105035271
NCBI-ProteinID: XP_010909089
UniProt: A0A6I9QIB9
Position
2:1648068..1654060
AA seq 432 aa
MASGTATAPGSSRQFNLAKESELRVEVGSDTPLRVRLLSGTAEIFGTELPPENWLSIPPR
QKLAIFAWNGATVELDGVSEVEYVADETPMVSYVNVHAILDGRRIRAKTSQGSDKDSSQG
PRVIVVGPMDSGKSSLCRMLLSWGCKQGWKPTFVDLDIGQGSITIPGCIAATPIEMPIDA
VEGIPLEMPIVYFYGHTTPNVNAELYKVLVKELARTLERQFSGNAESRAAGMVINTMGWV
EGLGYELLLHAIETFNANVVLVLGQEKLCSMLKEVLKSKPNVDVVKLHKSGGVVLRNTKV
RQKARSFRIREYFYGLANDLSPHSNIVNFSDISVYRIGGGPQAPRSALPIGAEPVADPTR
LVAVNISRDLLHLVLAVSYAKEPDQIISSNVAGFVYVTDIDIQRKKITYLAPCPGELPSK
FLIVGTLTWLEG
NT seq 1299 nt   +upstreamnt  +downstreamnt
atggcctccggcacggccactgctccgggctccagccggcagttcaacctggcgaaggag
agtgagcttagagtggaggtcggctccgatactccgctccgcgtccgcctcctctccggc
accgccgagatcttcggcaccgagcttcctccggagaattggctctccatcccccctcgc
caaaagctcgccattttcgcatggaacggtgcgaccgtcgaactggatggagttagcgaa
gttgagtacgttgcagatgagacgcctatggtgagttatgtgaatgtccatgctattctt
gatggacgaaggattcgtgctaaaacatcccaaggcagcgacaaagattcttcccagggt
cctcgagtgattgttgttggacctatggattctggaaagagtagcttgtgcaggatgctt
ctaagctggggttgtaaacagggttggaaacctacatttgtggatttggatattggtcaa
gggtctataacaattcctggatgtatcgctgctacgcccattgagatgcctatagatgca
gtggaaggaattcctctggaaatgcctattgtgtatttttatgggcacaccactccaaat
gtgaatgccgagttgtacaaagtgcttgtgaaggagctagcacgaactctggaaagacag
ttttctggaaatgctgaatctagagctgcaggcatggtgattaacaccatgggatgggta
gaaggtcttggatatgagttgcttctacatgcaattgaaaccttcaatgctaatgtggtt
ctggtcttgggacaggagaaactttgcagcatgctgaaagaggtactaaagagcaagcct
aatgttgatgttgtgaaactacataagtcaggtggtgttgtcctgaggaatactaaggtc
cgccagaaggcaagaagctttagaatcagggagtacttttacgggcttgcaaacgatttg
tctccacattcaaatattgtgaatttcagtgatatttctgtctaccgtattggtggtggt
ccacaggcaccccgatcagcactgcctataggtgcagagcctgtggcagaccctacccgg
ctggttgctgttaatataagccgtgacttactccatctagttctggctgtttcatatgca
aaggaacctgatcaaatcatctccagcaatgtcgcagggtttgtctatgtcacagacata
gatatccaaaggaagaagatcacatatctcgcaccatgcccaggtgaactcccaagcaaa
tttttgatcgtgggaactttgacatggttagaaggctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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