KEGG   Elaeis guineensis (African oil palm): 105040068
Entry
105040068         CDS       T03921                                 
Name
(RefSeq) LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase 40
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    105040068
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:egu03041]
    105040068
   03009 Ribosome biogenesis [BR:egu03009]
    105040068
Enzymes [BR:egu01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     105040068
Spliceosome [BR:egu03041]
 Complex A
  U1 snRNP components
   U1 related factors
    105040068
 Complex B
    105040068
Ribosome biogenesis [BR:egu03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    105040068
SSDB
Motif
Pfam: DEAD ResIII WW SnoaL
Other DBs
NCBI-GeneID: 105040068
NCBI-ProteinID: XP_019703567
Position
2:62419038..62430148
AA seq 698 aa
MATEEAAQASLGPRFAPEELIIPTPWKGLIDGSTGLLYYWNSEKNVTQYEKPATSGPPLP
TGSSPSASMPKLAQTPTIHTLPPNVTASQQPGQQMVQEAVQQVQQQQPSQQIFQQAGQLT
QQQQQLSQQLPFQQSGQQMPIQRSGQQSQQLQQMSKQQVTQQLXQTPHQQISYPQEQRQQ
AMQFSSYQQGQQSQGVPYQQGQQLRVPQFPHQQQTRESQMMLQGGQQPXGSQIPHSQGLQ
MMPQVLQHPQGLQIAHQQGQQSHGSHNGNQLGQQTQGQQVGFQSVEEATCQGGKQAGLSL
PLDQQSSLISSNHHLPATLLQVNISPVGGHSIQPQKQLSGASPVSAQQNASTLQLQPVGM
DLSYQQQQTSGCTIPNQPGHTLIXPPVGLKRGYDDDRHERGRNEFDSSPRMEEPMELLRQ
PRVANLPLSQSQQGDNVPAPFMTFESTGIPPEILREMHLAGFLSPTLIQAQGWPIAVQNR
DIVAIANTGSGKTLGYLIPAFIHLRXCGNNSRXGPTVLVLAPARELALQIQEEAIKFGSS
SGVSCMCLYGGAPKGPQLGEIERGADVIVATPGRLNDVLEMKKINFCQVSFLVLDEADHM
LDMGFEPQIRKIVNEIPPHRQTLMYPATWPKEVRKIARDLLKNPVQVNIGSVDEPAANKS
ITQHQLKVVPSIDGESMPPVLLRHEALHACMHASIYIN
NT seq 2097 nt   +upstreamnt  +downstreamnt
atggcaacagaggaggcggctcaagcttcactgggcccacgatttgcacctgaagaacta
ataatcccgacgccttggaaagggttgattgatggaagcactggtctcttgtactactgg
aactccgaaaagaatgtcacccaatatgaaaagccagctacctcaggccctccactgcca
actggttcttctccctcagcctccatgcccaagttggcccagacacccacaattcacact
ttacctcctaatgtcactgcatcacagcagcctggccaacaaatggttcaagaggcagtg
cagcaagtgcagcaacagcagccaagtcaacagatttttcagcaagcaggccagctaact
caacagcagcagcagctgagccagcaattgccgtttcagcagtcaggtcagcaaatgccg
attcagcggtcaggtcagcaaagtcagcagctgcagcaaatgtcaaagcagcaggtcaca
cagcagctttagcagacgccacatcagcaaatttcttaccctcaggaacagcgacaacag
gcgatgcaattttcttcttatcagcaggggcagcaatctcaaggggtaccataccagcag
gggcagcaactgcgggtgccacaatttcctcaccagcaacaaacacgggaatcacagatg
atgctacaaggggggcagcaaccgncaggttcacaaatcccacactcccagggccttcag
atgatgccccaggtgctccaacacccacaggggctacagattgctcatcagcaggggcaa
caatcacatggttcgcataatggaaaccagctagggcagcagacgcaaggacagcaagtt
gggttccaaagtgtggaggaagcaacttgccaagggggaaagcaggctggtctttcgttg
cctctggaccaacaaagcagtctgatatcttcgaatcatcaccttccagccacgcttctg
caggttaatatttctcccgtgggaggacattctatccaacctcagaaacagcttagtggg
gcatctcctgttagtgcacagcagaatgcttcaacacttcagttgcagccggtgggcatg
gacttgagctatcagcaacagcaaactagtggttgcacaattccaaatcagccggggcac
acactgatctgacctcctgtgggattgaaaaggggttatgatgatgatcgacatgaaaga
gggagaaatgaatttgattcttccccaaggatggaagagccaatggagcttctgcggcaa
ccaagggttgcaaatcttcccctttcacagagtcaacagggcgacaatgttcctgcacca
ttcatgaccttcgagtccactggcatccctccagagattcttagagagatgcatttggct
ggatttttgtctcccacactgatacaggcgcagggatggccaattgcagtacaaaacaga
gacatagtggccattgccaacactggctcaggaaagaccctgggctatcttattcctgca
tttatccatctgagatgatgtggaaataattctcggntgggtccaacagtgttggttttg
gctccggctcgggaacttgctttacaaatacaagaagaggccatcaagtttggttcttct
tccggtgtttcttgcatgtgtctatatgggggagccccaaagggtcctcagctaggagaa
atagaacgaggagcagatgtaatagtggctacacctggtcggcttaatgacgttcttgag
atgaagaagatcaatttctgccaggtttcttttcttgtgcttgatgaagcagaccatatg
cttgacatgggttttgaacctcagatacgaaagattgtgaatgagattcctccacacagg
cagactctcatgtacccagcaacttggcctaaggaggtgaggaaaatagccagggatcta
ctaaagaatcctgttcaggttaatattggcagtgttgatgagcctgctgcaaacaagtcc
attacacagcaccagctcaaagtagtcccttccattgatggtgaatctatgcctccggta
ctccttcgacatgaagccctgcatgcatgcatgcatgcatccatatatataaattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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