KEGG   Elaeis guineensis (African oil palm): 105040626
Entry
105040626         CDS       T03921                                 
Name
(RefSeq) uncharacterized protein LOC105040626 isoform X1
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
egu  Elaeis guineensis (African oil palm)
Pathway
egu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:egu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105040626
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:egu03000]
    105040626
   03019 Messenger RNA biogenesis [BR:egu03019]
    105040626
   04121 Ubiquitin system [BR:egu04121]
    105040626
Enzymes [BR:egu01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     105040626
Transcription factors [BR:egu03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    105040626
Messenger RNA biogenesis [BR:egu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     105040626
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     105040626
Ubiquitin system [BR:egu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    105040626
SSDB
Motif
Pfam: zf-RING_4 RRM_1 Baculo_IE-1 zf-RING_2
Other DBs
NCBI-GeneID: 105040626
NCBI-ProteinID: XP_010915533
UniProt: A0A6I9QUW4
Position
3:complement(9385449..9405045)
AA seq 1026 aa
MSNQREIRCPLCMEEMDLTDQQLKPCTCGYEMCVWCWHHIIEMAKKDDTEGRCPACRSPY
DKETILGRTISRERLAELNFEKKQKLQKAKLKTSEGRSDLTTIRVIKRNLVYVAGLPAKI
ADEETLRKKEFLGQYGKIIKIVIARDVGTNRLFPSFNTSVVYVTFSKEQEAFRCIEVVNG
FILYGRTLKACFGTTRYCHAWLKNMPCRNPNCFYLHDAGPQEDICTKDEVASACLSKLPQ
NSGIALHNFERRSGSVLPPPRDNFCSSNSSVVKDKFLIHSVVYTPIDNGKRHFQNGDSGK
SGVLPVAASWGSRLASGRSSYAGVAFSQGTIEYPSISNSSLAGVDIQALPQNAYQTRRQM
IMSRNQMPLSNGHLENITSFKPYVEDGFREDMVMPNFKSSNCTSIMTNRSCCVTYREDME
SRITQSSHSSDSVGFQPYASFSNDVKCSTMVENSQSSSCIPRSVSHGTTWDSGCLYGITE
GVFSPVGYPVISSIEDTPVSNMQATILDPAFRAASSSQSLPLSFNRSSKFPDMTRMRSSA
DFEAKDISFLLDNRKFEGTSALVPGGTTIADPRVGEHSTCSVIIGLSCKGEQRKLQSEFS
SCGINNFKLQHLECWPEKPISTETDIVLDSAVSNQANMDLRGDSMTSRISYVDFREDNSL
PDKAKDDAGEDSIISDILSLDLGQVDHLIDHYSLRELLSGTNESDYSKSYNSRMPCNDSE
SKFSFASLDDSNSGKEQSFPLDSNVFALDMKTDQPDIKEKRIGSTNTSLSGLSAYDMDNP
EILNCRYGYFACDVANELKLPSSLCQLASPVSRSGVLPSSGFRAGIRSIPPGFHPRFVDD
QYLAFSKLTNSGSIAQYQISGNSPCINSSQENLRYNSFNDPRINQVNGSATASLCKGKLS
RPMIWQFSLSSNSVSLAETDQALQFPARLGNLTQNSVNLANQSRNMTFQDMVNNYDGSWG
SFNISSPTAMESGVTGRGQSALAEIIHHLIPGSNHGSWRLCQEHEKPGFQVPDSSRLLFN
IQYEQS
NT seq 3081 nt   +upstreamnt  +downstreamnt
atgagcaaccaaagggaaatacgctgtccactgtgcatggaggagatggatctgacagat
caacagttgaagccttgtacatgtggatatgagatgtgcgtctggtgttggcatcatata
atcgaaatggccaagaaggatgatactgaaggacgatgtcctgcatgccgcagtccatat
gataaggagacgattcttgggaggacaatcagcagagagaggcttgcagaactaaatttt
gagaagaagcagaaattgcaaaaggctaaattaaaaacctcagaagggcgaagtgatcta
actactatccgtgtcattaagcggaatcttgtttatgttgctggtctacctgctaaaata
gctgatgaagagacccttaggaagaaggaatttttgggacagtatgggaaaattataaag
attgttatagcccgggatgttggaaccaatcggctttttccatcattcaacacttctgtt
gtatacgttacgttttcaaaggagcaggaggcttttcgttgcattgaggttgtaaatggt
ttcattttatatggtagaactttaaaagcatgctttggtactacaagatattgccatgcc
tggttaaagaatatgccttgtcgcaacccaaactgtttttatttgcatgatgctggtccc
caagaagatatctgcacaaaagatgaagttgcttcagcatgtctaagtaaacttccacaa
aattctggaattgctttgcataattttgaacgacgttcgggaagtgttttacctcctcca
agggacaatttctgcagcagcaacagtagtgttgttaaggacaaatttctcatccactct
gttgtttatactcctattgataatggcaaaagacattttcaaaatggtgatagtggaaaa
tctggtgtccttccagtagcggcttcatggggctcaagactcgcttctggtaggtcatca
tatgctggtgttgcattttcccaaggaacaattgagtatcctagcatttccaatagttct
cttgctggagttgacatacaagcattaccacagaatgcctatcaaactcgaaggcaaatg
atcatgtcaagaaatcaaatgcctctttcaaatgggcacctagaaaatattacatcattc
aaaccatatgttgaagatggatttagagaagatatggttatgccaaatttcaagtcaagc
aattgtactagcataatgacaaatagatcatgttgtgttacatatagagaagacatggaa
tcaagaatcacccaatcatcacactcctctgattcagttggatttcaaccatatgcttct
ttttcaaatgatgtcaagtgttctacaatggtggaaaatagtcagtcttcatcttgtatt
ccccgttcagtctctcatggaaccacttgggattctgggtgtctgtatggcatcactgaa
ggagtcttttctccggtaggatatcctgtgatctcctctatagaagataccccagtatca
aacatgcaggctacaattctagatccggcgttcagagctgcttcatcttctcaaagtttg
cctctatcttttaatcggtctagcaaatttccagatatgacacgcatgagatcatctgca
gactttgaagccaaagatatttcttttcttctagataacagaaaatttgaaggtacctct
gctttggttcctggtggaactaccattgcagaccctagagttggtgagcattcaacttgt
tctgtaattattggactgtcttgtaaaggtgaacaaaggaagttacagagtgaattctct
tcctgtggtataaacaattttaagcttcagcacttggaatgttggcctgaaaaacctatc
tcaacagagacagatatagtcctggattctgctgtatccaaccaagctaacatggatctg
agaggtgacagtatgacatcacgcatttcctatgtagattttagagaagataatagtcta
ccagataaagccaaggatgatgcaggagaggatagtataatatcagatattttgtctctg
gatcttggtcaggttgatcatctgatagatcattatagtctcagggaactgctgagtggc
actaatgaaagcgactactcaaaatcgtataattctcggatgccatgcaatgacagtgaa
tccaaattttcttttgcaagcttagatgattccaacagtggaaaagagcaatcatttcct
ttagattctaatgtttttgctcttgatatgaaaactgatcagccagacattaaggaaaag
agaataggcagtacaaacacatctctcagtgggttatctgcttatgatatggacaatcct
gaaattcttaactgccgttatggatattttgcatgtgacgttgccaatgaattgaaactt
ccatctagtttgtgtcagttagcttctcctgtttcaaggtccggggtgttgccttcttct
ggatttcgtgctgggattaggtccattcctcctggtttccatcctcgatttgtggatgac
caatatctagctttttccaagcttacaaattctggttctattgctcaataccagatttca
ggaaattcaccttgtataaattcctctcaagagaatctgagatacaacagctttaatgat
cctcggatcaatcaggttaatggttctgcaactgcatcactttgtaaaggaaagttgtca
cggccaatgatatggcaattttctctgagctctaactcggttagtcttgctgagactgac
caggcacttcaatttccagcaagattgggaaatttgactcaaaattcagtgaacttagcg
aatcaaagcaggaacatgacttttcaggatatggtgaataattacgatgggtcatggggg
tcatttaatattagcagtccaactgcaatggagtcaggggttacaggcagaggccaatct
gctttggctgagattatacatcatttaattcctggttcaaatcatggatcttggagactc
tgccaagaacatgagaaacccggttttcaggttcctgattcttctagattattgtttaac
atacaatatgagcaaagttga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (31)   

Download RDF
DBGET integrated database retrieval system