KEGG   Egretta garzetta (little egret): 104125248
Entry
104125248         CDS       T05152                                 
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
  KO
K10610  DNA damage-binding protein 1
Organism
egz  Egretta garzetta (little egret)
Pathway
egz03420  Nucleotide excision repair
egz04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:egz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    104125248 (DDB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    104125248 (DDB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:egz04121]
    104125248 (DDB1)
   03400 DNA repair and recombination proteins [BR:egz03400]
    104125248 (DDB1)
Ubiquitin system [BR:egz04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     104125248 (DDB1)
DNA repair and recombination proteins [BR:egz03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      104125248 (DDB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      104125248 (DDB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 104125248
NCBI-ProteinID: XP_009635975
Position
Unknown
AA seq 1123 aa
MLQGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKTAVMELFRPKGESKDLL
FILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYD
GLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICFVYQDPQGRHVKTYEVSL
REKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYHNGDKYLAIAPPIIKQST
IVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYL
DNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVT
CSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDSHRETDNTLVLSFVGQTRVLM
LNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPNGKN
ISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVACLDITPLGDTNGMSPLCA
IGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLS
LETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVNLKEVN
YMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYESPRKICYQEVSQCFGVLS
SRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHETSFGEEVEVHNLLIIDQH
TFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFHYSDGK
LQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELRTECNHYNNIMALYLKTK
GDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVC
QKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMI
GLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTERKTEPATGFIDGDLIESF
LDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq 3372 nt   +upstreamnt  +downstreamnt
atgttgcaggggcacttcacctcggcggaggatttaaacctgctgattgccaagaataca
cgactggagatctacgtggtgacagccgaggggctgcggcccgttaaggaggtggggatg
tacggcaagactgctgtcatggagctcttccgccccaagggggagagcaaggatttgttg
ttcatcctgacggccaagtataacgcctgcatccttgagtacaagcagaacggggacagc
attgacattataacccgtgcccatggcaacgtgcaggatcgcatcggtcgtccctcagag
accggcataatcggcatcattgacccagagtgccggatgatcggcctacggctctatgat
ggcctcttcaaagtcattcccctggaccgggagaacaaggagttaaaggcttttaacatc
cgcctggaagagctccaggtcatcgatgtgaagtttctctatggctgtcaggctccgacc
atctgctttgtctaccaggaccctcagggtcgccacgtcaagacgtacgaggtgtccctg
cgcgagaaggagtttaacaaaggcccctggaaacaggagaacgtagaggctgaagcctcc
atggtcatcgcagtgccagagccttttggaggcgcgatcatcattgggcaggagtctatc
acctatcacaacggagataaatacctagctatagctccgcctatcatcaagcaaagtacg
attgtgtgccacaaccgtgtggatcccaatgggtcccgttacttgctgggggacatggaa
ggacgtctcttcatgctgcttctggagaaggaggagcagatggacggcaccgtcaccttg
aaggacctgcgtgtggaactgctcggcgagacatccattgcagagtgcttgacctacctg
gacaatggagttgtgtttgtcggttctcggcttggggattcccagcttgtgaagctcaac
gtggacagcaacgagcagggctcctatgtggtggctatggagaccttcaccaacctcggt
cccatcgtcgacatgtgtgtggtggacctggaaagacaaggccaagggcagctggtcacc
tgctcaggtgcatttaaagagggttcactgcggatcatccggaatggcattgggattcat
gagcacgccagcattgacttgccagggattaaaggcttgtggcccctgagatcggactct
catcgtgaaacagacaacacgttggtgctgtcctttgttggccagaccagggttcttatg
ttaaatggagaggaagtagaagagacggagctcacagggtttgtggatgatcagcagact
ttcttctgcggcaacgtggcgcatcagcagttgatccagatcacctctgcctctgtgaga
ctggttagtcaggagcccaaagccctggtgagcgagtggaaggagcccaacggaaagaac
atcagcgtggcttcctgtaacagcaaccaggtagtggtggctgtgggccgagccctgtac
tacctggagatccggccccaggagctcaggcagatcagctgcacagaaatggagcatgaa
gttgcctgcctggacatcacccctttgggggacactaacggcatgtccccgctgtgcgcc
atcgggctctggactgacatctctgcccgcatcctaaagctgccctcgtttgaactgctg
cacaaagagatgctgggaggagaaattatccctcgctccatcttgatgacgacctttgag
agcagccattacctcctgtgtgccctgggggacggagctctcttctacttcgggctcagc
ctcgagacaggcttgctgagtgaccggaagaaggtgaccctcgggacccagcccaccgtc
ctgaggactttccgctccctgtccaccaccaacgtctttgcctgctctgaccgccccacc
gtcatctacagcagtaaccacaagctggtcttctccaacgtcaacctgaaggaggtgaac
tacatgtgtcccctcaattcggatgggtaccccgacagcttggcgttggccaataacagc
accctgacaatcggcaccattgatgagatccagaagctgcacatccgcacggttcccctc
tatgaatcgcccaggaagatctgctaccaagaggtatcgcagtgtttcggcgtgctctcg
agtcgtatcgaggtgcaagatgccagcgggggcaccactgcgctcagacccagcgccagc
acccaggccctgtccagcagcgtcagcaccagcaagctgttctccagcagcacagcaccg
catgagacctccttcggagaggaggtggaggtgcacaacttgctcatcatagaccagcac
acctttgaagtgcttcacgctcaccagtttctgcaaaacgagtacgccctcagcctggtc
tcctgcaagcttggcaaggatccaaacacctacttcatcgtgggcaccgccatggtgtat
cccgaggaggcagagcccaaacagggccgcatcgttgtcttccattattctgatgggaag
ctgcagagcctggctgagaaggaggtcaagggggctgtgtattccatggtggagttcaac
gggaagctcttagccagcatcaacagcacggtgcgcctgtatgagtggacagcagagaaa
gagctgcgcacggagtgcaaccattacaacaacatcatggccctctacctaaagaccaag
ggagacttcatccttgtgggcgatctgatgcgctccgtcctcctccttgcgtacaagccc
atggaaggaaacttcgaggagattgcccgggacttcaatccaaactggatgagcgccgtg
gaaatcctggatgatgacaacttcttgggagcagagaacgctttcaatttgtttgtgtgc
cagaaggacagcgcggccacgaccgatgaggagcgccagcacttgcaggaggtggggctg
tcccacctgggagagttcgtcaacgtcttctgtcatggatctctggtcatgcagaacctg
ggtgagacgtccacaccaacacagggctcggttctcttcggcacggtcaacggcatgatc
ggcctggtaacctcgctgtcagagagctggtacaacctcctcctggacatgcagaacagg
ctgaataaagtcatcaagagcgtgggcaagatcgagcactccttctggagatcgtttcac
accgaacgcaagacagaaccggctacggggttcattgatggcgacctgattgaaagcttc
ctggacatcagcaggcccaagatgcaggaggtggtggcaaacttgcagattgacgatggc
agcggcatgaagagggaggccaccgtagacgacctgataaagatcgtggaggagctgacc
cggatccattag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (24)   

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