KEGG T00238: EHI

Entamoeba histolytica: EHI_104460

Entry

EHI_104460 CDS T00238

Gene name

38.t00026

Definition

nonsense-mediated mRNA decay protein

Orthology

K07562

nonsense-mediated mRNA decay protein 3

Organism

ehi Entamoeba histolytica

Pathway

ehi03008	Ribosome biogenesis in eukaryotes
ehi03013	RNA transport

Class

Genetic Information Processing; Translation; RNA transport [PATH:ehi03013]
Genetic Information Processing; Translation; Ribosome biogenesis in eukaryotes [PATH:ehi03008]

SSDB

Motif

Pfam:

NMD3 Ribosomal_L37ae DUF4437

Other DBs

NCBI-GI:

NCBI-GeneID:

JCVI-Pathema:

UniProt:

AA seq 411 aa
MSNTTNTNEPEYINLPERKAEMLCCVCGALIEVNPSSMCANCLHKTIDITEGIPKQITID
QCKRCKKFLAGTTWFYCEPESRELMTYLIKRVKGLNKLKLINASYIWTEEHSKRLKIKLT
VEKEVFKNTVIQQDFNVEFIIVNGFCDNCHKAEAKNTWQSVVQLRQHAEHKKSILTLEQE
ILKANAHQNATDIQEMPDGMDIFFQSVDHAKKFIDFLQTLVPLRYQQTKKLVSQDDHKNT
YDFKVSFSVEVVPISRQDLVFLPKVNVNQLGGVGPLMVCTQVAGTLHLVDVLKGTEVELY
AHQFFQHPFDALTNSKNLVEYYVVEVTKIGKPVGQYQLADCQIIKSEDFGVTEDYLYVKT
IFGNTIREGETALGYDLVNLNANNDNFESYQQRGLEEGTLPEVILIGRGHL

NT seq 1236 nt +upstreamnt +downstreamnt
atgagtaataccactaatactaatgaaccagaatatattaatttacctgaaagaaaagct
gaaatgctttgttgtgtttgtggagcattaattgaagttaatcctagtagtatgtgtgct
aattgtttacataaaactattgatattacagaaggaattcctaaacaaataactattgac
caatgcaaaagatgtaaaaagtttttagcaggaacaacatggttttattgtgagccagag
tcaagagaattaatgacttatttaataaaaagagttaaaggattaaataaattaaaatta
atcaatgcgtcatatatttggactgaagaacattcaaaaagattaaagattaaattaact
gttgaaaaagaagtctttaaaaatactgtcattcaacaagactttaatgtagagtttatt
attgtaaatggattttgtgataattgtcataaagctgaagcaaaaaatacatggcaaagt
gttgttcaattaagacaacatgctgaacataagaaatctattttaacattagaacaagaa
atattaaaagcaaatgctcaccaaaatgctacagatatccaagaaatgcctgatggaatg
gatatcttctttcaatctgttgatcatgcaaaaaaatttatagacttcttacaaacatta
gttcctttaagatatcaacaaacaaagaaattggtgtctcaagatgaccataaaaacact
tatgactttaaagtttctttttctgttgaagttgttcctatttctcgtcaagaccttgta
tttcttccaaaagttaatgtaaatcaattaggtggtgttggaccattaatggtgtgtact
caagtagcaggaacattacatcttgttgatgtattaaaaggaaccgaagtagaattatat
gctcaccaatttttccaacatccatttgatgcattaacaaattctaagaatcttgttgaa
tattatgttgttgaagtaactaaaatcggtaaaccagttggacaatatcaattagctgat
tgtcaaatcattaaatctgaagactttggtgttactgaagattatttatacgttaaaact
atttttggtaatacaataagagagggagaaactgctctaggatatgaccttgttaatctc
aatgctaataatgacaattttgaaagttatcaacaacgtggattagaagaaggaacatta
ccagaagttattttgattggaagaggacatctataa

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JCVI-PATHEMA-EHI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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