KEGG   Entamoeba histolytica: EHI_176970
Entry
EHI_176970        CDS       T00238                                 
Symbol
192.t00007
Name
(RefSeq) cdc48-like protein
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
ehi  Entamoeba histolytica
Pathway
ehi04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:ehi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    EHI_176970 (192.t00007)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ehi03019]
    EHI_176970 (192.t00007)
   03009 Ribosome biogenesis [BR:ehi03009]
    EHI_176970 (192.t00007)
   04131 Membrane trafficking [BR:ehi04131]
    EHI_176970 (192.t00007)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ehi04147]
    EHI_176970 (192.t00007)
Messenger RNA biogenesis [BR:ehi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     EHI_176970 (192.t00007)
Ribosome biogenesis [BR:ehi03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    EHI_176970 (192.t00007)
Membrane trafficking [BR:ehi04131]
 SNARE
  SNARE associated proteins
   Others
    EHI_176970 (192.t00007)
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    EHI_176970 (192.t00007)
Exosome [BR:ehi04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   EHI_176970 (192.t00007)
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_33 AAA_22 AAA_14 AAA_5 CDC48_2 AAA_28 AAA_18 Mg_chelatase RNA_helicase nSTAND3 AAA_17 TIP49 IstB_IS21 ABC_tran Vps4_C AAA_25 NACHT ATPase_2 AAA_7 Parvo_NS1 Zeta_toxin Bac_DnaA DUF815 TsaE Rad17 Sigma54_activat NB-ARC Viral_helicase1 AAA_24 Molydop_binding
Other DBs
NCBI-GeneID: 3405211
NCBI-ProteinID: XP_650911
UniProt: C4LY22
AA seq 772 aa
MSQDEQVQVPMNEEEPKKIIVKKHRLIVEESKEDDMSIVYMNPQRMEELNFFEGDSILIK
GKRRKSTVCIVMAEEGLTENMIRLHRMTRYNLRVKLGDVVGVETPQNVPYAIKIHVLPID
DTVEGITGDLFETYIRPYFSDVFRPIKKDDHFLCHGGMRTVEFKVVDIDPSPYALVVNDT
IIHCEGEPIKREDEERPDDLGYDDIGGCRRQLGQIREMVELPLRHPQLFQAIGIKPPKGV
LLYGPPGCGKTMIARAVANETGVFLILINGPEIMSKMAGESEGNLREAFAEAEKNAPALI
FIDEIDSIAPKRDKAQGEVERRVVAQLLTLMDGMKSRSNVIVMAATNRPNAIDSALRRFG
RFDREIDIGVPDETGRLEILNIHTKKMKIADDVDLLQIAKETHGYVGADLAQLCTEAAML
CIRENMAHVDVEADSIPVEVLNGMKVTMEHFRNVMKTCTPSALRETVVEIPNVKWEDIGG
LEDVKRELKEVVQYPVEFPDKFRKFGMEPSKGVLFFGPPGCGKTLLAKAVASQCKANFIS
IKGPELLTMWYGESEANVRDVFDKARQAAPCVLFFDELDSIGRARGGGAGDAGGSADRIL
NQLLTEMDGVGKKKQVFIIGATNRPDILDPALLRPGRLDQLLFIPLPDKASRISILQAKL
RNSPVAPDVDLDWIAEHTENFSGADLAEIVQRACKEAIRDTINELAVAEAEKAAQPEDQK
MEIEVKPMIKVKHFNAALRDARRSVSDIEIQRYNMYAETLLQRRSIGNFSFN
NT seq 2319 nt   +upstreamnt  +downstreamnt
atgtctcaagacgaacaagttcaagttccaatgaacgaagaagaaccaaaaaagataatt
gttaaaaaacaccgtcttattgtagaagaaagtaaagaagatgatatgtcaattgtatat
atgaatccacaaagaatggaagaattgaatttctttgaaggtgatagtattttaattaaa
ggaaaaagaagaaaaagtacagtttgtattgttatggcagaagaaggattaacagaaaat
atgatcagacttcatcgtatgactagatacaacttaagagttaagttaggtgatgtagtt
ggagttgaaaccccacaaaatgttccttatgctattaaaattcatgtattaccaattgat
gatactgtagaaggaattactggagatttatttgaaacatatatccgaccatatttcagt
gatgtttttagacctattaagaaagatgaccattttttgtgccatggaggtatgagaaca
gttgaattcaaagttgttgatattgacccatcaccatatgcacttgttgtaaatgacact
attattcattgtgaaggagaaccaattaaaagagaagatgaagaacgaccagatgatctt
ggatatgatgacattggagggtgtagaagacaacttggacaaattcgagagatggtagaa
ttaccattaagacatccacaattattccaagctattggtattaaaccaccaaaaggagtg
ttattatatggaccaccaggatgtggtaaaacaatgattgcacgagctgttgctaatgaa
acaggagttttcttaatattaattaatggaccagaaattatgagtaaaatggcaggagaa
tcagaaggtaatttaagagaagcatttgcagaagcagaaaagaatgcaccagcacttatt
tttattgatgaaattgattctattgcaccaaaaagagataaggcacaaggagaagttgag
agaagagttgttgcacaattattaacacttatggatggtatgaaaagtaggtcaaatgtt
attgttatggcagctactaatcgaccaaatgctattgattcagcattaagaagatttggt
agatttgatagagaaatagatattggagttccagatgaaacaggaagacttgaaattctt
aatattcacactaaaaaaatgaaaattgcagatgatgttgatttactccaaattgctaaa
gaaacacatggatatgttggagctgatttagcacaattatgtactgaagctgctatgtta
tgtattagagaaaatatggcacatgttgatgttgaagcagattcaattccagttgaagta
ttaaatggaatgaaagttacaatggaacattttagaaatgtgatgaaaacatgtacacca
tcagcattaagagaaacagttgttgaaataccaaatgtaaaatgggaagatattggagga
cttgaagatgttaaacgagaattaaaagaagttgttcaatatcctgttgaatttcctgac
aagtttagaaagtttggaatggaaccatcaaaaggagttcttttctttggaccaccagga
tgtggtaaaacacttcttgctaaagcagttgcttcacaatgtaaagccaattttatttca
attaaaggaccagaattactaacaatgtggtatggagaatcagaagctaatgttcgtgat
gtttttgataaagcaagacaagcagcaccatgtgtattattctttgatgaattagattct
attggaagagcaagaggaggaggagctggagatgctggaggatctgcagatagaatttta
aatcaattattaactgaaatggatggagttggaaagaaaaaacaagtttttattattgga
gctactaatagacctgatattttagacccagcattattaagaccaggacgacttgaccaa
ttattatttattccattacctgacaaagcatcaagaatatcaattctacaagctaaatta
agaaattcacctgttgcaccagatgttgatttagactggattgctgaacatactgaaaat
ttctctggtgctgacttagcagagattgttcaaagagcttgtaaagaagctattagagac
actattaatgaattagctgttgctgaagcagaaaaggcagcacaaccagaagatcaaaaa
atggaaatcgaagttaaaccaatgattaaagttaaacactttaatgctgctttaagagat
gcaagaagatcagtctctgatattgaaattcaaagatacaatatgtatgcagaaacactt
cttcaaagaagaagcattggtaattttagtttcaattga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (15)   
   KEGG ORTHOLOGY (1)   
   RefGene (11)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (36)   
   Pfam (36)   
All databases (61)   

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