KEGG   Emiliania huxleyi: EMIHUDRAFT_451926
Entry
EMIHUDRAFT_451926 CDS       T02915                                 
Name
(RefSeq) hypothetical protein
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
ehx  Emiliania huxleyi
Pathway
ehx03013  Nucleocytoplasmic transport
ehx03015  mRNA surveillance pathway
ehx03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ehx00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EMIHUDRAFT_451926
  09122 Translation
   03013 Nucleocytoplasmic transport
    EMIHUDRAFT_451926
   03015 mRNA surveillance pathway
    EMIHUDRAFT_451926
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ehx03019]
    EMIHUDRAFT_451926
   03041 Spliceosome [BR:ehx03041]
    EMIHUDRAFT_451926
   03009 Ribosome biogenesis [BR:ehx03009]
    EMIHUDRAFT_451926
   03012 Translation factors [BR:ehx03012]
    EMIHUDRAFT_451926
Enzymes [BR:ehx01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     EMIHUDRAFT_451926
Messenger RNA biogenesis [BR:ehx03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     EMIHUDRAFT_451926
   mRNA cycle factors
    Stress granule specific factors
     EMIHUDRAFT_451926
Spliceosome [BR:ehx03041]
 Complex C
  Other components
   EJC/TREX
    EMIHUDRAFT_451926
Ribosome biogenesis [BR:ehx03009]
 Eukaryotic type
  90S particles
   Helicases
    EMIHUDRAFT_451926
Translation factors [BR:ehx03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    EMIHUDRAFT_451926
SSDB
Motif
Pfam: DEAD Helicase_C AAA_19 ResIII AAA_22 AAA_30 nSTAND1 P-loop_SecA TniB SLFN-g3_helicase
Other DBs
NCBI-GeneID: 17260015
NCBI-ProteinID: XP_005766297
JGI: Emihu1_451926
UniProt: R1BUL9
Position
Unknown
AA seq 392 aa
MTAMVDDETLDFSTSDDVQIVESFDAMGLKDELLRGIYAYGFEKPSAIQQRAIMPILKGR
DTIAQAQSGTGKTTIFSVGVLHCIDTSQRETQALALSPTRELAEQTQKVMLALGDYMSVQ
CHACIGGKSIGEDIRRLDAGVHAVSGTPGRVFDMIRRRNLRTRAIKMLVIDEADEMLSQG
FKEQIYDIYRYLPPATQVVLISATLPNEILEMTRKFMTDPVRILVKRDELTLEGIKQFFV
AVEREEWKFDTLCDLYDTLTITQAVIFCNTKKKVDWLTHKMRQANFTVSSMHGDMPQKER
DAIMAEFRSGDSRVLIATDVWGRGIDVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAIN
FVKSDDIRILRDIEQFYSTQIDEMPMNVADLI
NT seq 1179 nt   +upstreamnt  +downstreamnt
atgacggcgatggttgacgacgagacgctcgacttcagcacgtcggacgacgtgcagatc
gtcgagtccttcgatgccatggggctcaaggacgagctgctccgcggcatctacgcgtac
ggctttgagaagccgtccgccatccagcagcgcgccatcatgcccatcctcaagggccgc
gacaccatcgcgcaggcgcagtcgggcaccggcaagacgaccatcttttcggtgggcgtg
ctgcactgcatcgacacctcgcagcgcgagacgcaggcgctcgcgctctccccgacgcgc
gagctggcagagcagacgcaaaaggtgatgctcgcgctcggagactacatgtcggtgcag
tgccacgcctgcatcggaggcaagtcgatcggcgaggacatccgccgcctcgacgccgga
gtgcacgccgtctccggcacgccgggccgcgtcttcgacatgatccgccgccgcaacttg
cgcacgcgcgcaatcaagatgctcgtcatcgacgaggcggacgagatgctctcccagggc
ttcaaggagcagatctacgacatctaccgctacctgccgcccgccacccaagtcgtcctc
atctcggcgacgctgcccaacgagatcctcgagatgacgcgcaagtttatgactgacccc
gttcggattctggtcaagcgcgacgagctgacgctcgagggcatcaagcagttcttcgtc
gcggtcgagcgggaggagtggaagttcgacacgctctgcgacctgtacgacaccctcacc
atcacgcaggcggtcatcttttgcaacacgaagaagaaggtcgactggctcacccacaag
atgaggcaggcaaacttcaccgtctcctccatgcacggggacatgccgcaaaaggagcgc
gacgcaatcatggccgagttccgctcgggcgactcgcgcgtcctcatcgccacagacgtg
tggggccgcggcatcgacgtgtcgctcgtgatcaactacgacctccccaacaaccgcgag
ctctacatccaccgcatcggccgctcgggccggttcggccgcaagggcgtcgcgatcaac
ttcgtcaagagcgacgacatccgcatcctgcgcgacatcgagcagttctactcgacgcag
atcgacgagatgccgatgaacgtagcagacctgatctag

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (415)   
   KEGG ORTHOLOGY (1)   
   RefGene (410)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (10)   
   Pfam (10)   
All databases (438)   

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