KEGG   Emiliania huxleyi: EMIHUDRAFT_56115
Entry
EMIHUDRAFT_56115  CDS       T02915                                 
Name
(RefSeq) hypothetical protein
  KO
K03679  exosome complex component RRP4
Organism
ehx  Emiliania huxleyi
Pathway
ehx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ehx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EMIHUDRAFT_56115
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ehx03019]
    EMIHUDRAFT_56115
Messenger RNA biogenesis [BR:ehx03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     EMIHUDRAFT_56115
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     EMIHUDRAFT_56115
SSDB
Motif
Pfam: RRP4_S1 KH_6 ECR1_N
Other DBs
NCBI-GeneID: 17275785
NCBI-ProteinID: XP_005782940
JGI: Emihu1_56115
UniProt: R1F5E5
Position
Unknown
AA seq 179 aa
VTPGEPIDAEPGCLRGHGTLMRDDGTLVATVSGVVERVNKLVSVRPLRARYHGEVGDVVI
GRIVGAKRWRADINGRQDAVLMLASINLPGGEQRRRTAEDQLNMRQFYVEHDLLSAEVQA
FFQDGASSLHTRSLKYGKLSGGSLVIVSPGLMKRLKQHFHLFEFGVAAIFGMNGYVWVS
NT seq 537 nt   +upstreamnt  +downstreamnt
gtcactccgggcgagccgattgacgcggagcccggctgcctccgagggcacggcacgctg
atgcgcgacgacggcaccctcgtcgcgacggtctcgggtgtggtggagcgggtcaacaag
ctcgtgtcggtccgaccgctgcgggcgcggtaccacggcgaggtgggcgacgtggtaatc
ggccggattgtgggcgccaagcggtggcgcgccgacatcaacggccggcaggacgccgtg
ctcatgctcgcctccatcaacctgccgggaggagagcagcggcggaggactgccgaggac
cagctcaacatgcgccagttttacgtcgagcacgacctgctgtctgcagaggtgcaagcc
ttcttccaggacggggcctcgtcgctgcacacgcgctcgctcaagtacggcaagctctcg
ggcggctccctcgtcatcgtctcgcccggcctcatgaagcgcctcaagcagcacttccac
ctctttgagtttggcgtcgccgcaatctttggcatgaacggctacgtctgggtgtcg

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (40)   
   KEGG ORTHOLOGY (1)   
   RefGene (35)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   JGI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (50)   

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