KEGG   Eutypa lata: UCREL1_546
Entry
UCREL1_546        CDS       T03103                                 
Name
(GenBank) putative dna ligase protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
ela  Eutypa lata
Pathway
ela03030  DNA replication
ela03410  Base excision repair
ela03420  Nucleotide excision repair
ela03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:ela00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    UCREL1_546
   03410 Base excision repair
    UCREL1_546
   03420 Nucleotide excision repair
    UCREL1_546
   03430 Mismatch repair
    UCREL1_546
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ela03032]
    UCREL1_546
   03400 DNA repair and recombination proteins [BR:ela03400]
    UCREL1_546
Enzymes [BR:ela01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     UCREL1_546
    6.5.1.6  DNA ligase (ATP or NAD+)
     UCREL1_546
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     UCREL1_546
DNA replication proteins [BR:ela03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    UCREL1_546
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     UCREL1_546
DNA repair and recombination proteins [BR:ela03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     UCREL1_546
   NER (nucleotide excision repair)
    Other NER factors
     UCREL1_546
   MMR (mismatch excision repair)
    Other MMR factors
     UCREL1_546
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-ProteinID: EMR72409
UniProt: M7T0H4
Position
Unknown
AA seq 864 aa
MPPKQATLGKFFGKPNGSKPTPTQQTKLSFATKSAKKPKDEPQDSTEEAESSGKNIKAEG
DAKENGDRSPDSKKRSRTALPSKGKAKRTPTKVKQEEQEEPKEDLEEEAPVSKRPRRNRR
RIEEDEDEDEVMSDELVKPSKDTKSKKKPAKESPAPTTKGKKAAKTQEADDEVKSEESAA
SSASEAEDDLEEKPDVAAKARAKIQTKLKTKAKDPYPDWKAGTPVPYAALCTTFSLIELT
TKRLEITEHCALFLRQVLRLTPEDYLPTVLLMINKLAPDYAGIELGIGESLIMKAIGETT
GRSLQVIKADQKEIGDLGLVAVKSRSTQPTMFKPKPLTVKGVHNGLMDVATVSGHGAQGR
KVDLIKKLLSAADAHSTGKVDINKDKGGPSEAKYLVRFLEGKLRLGLAERTVLVSIAQAM
ICHEKEQKGQVPSTTEMEQAESTLKTVYRHVMTSSRWDVIIPTMVEHGIMNLRERCKLRP
GVPLKPMLAKPTKAITEVLDRFENQKFTCEYKYDGERAQIHYVAKDHSGEYIDALPSATK
EAAKGVASIFSRNSEDLSKKYPDVLEKLHTWVKEGTKSFVLDCETVAWDMAEKKVLPFQQ
LMTRKKKDVKTEDVKVKVCVFAFDLLFFNGEAIVEKSLRERRELLHDAFTPVEGEFAFAT
HMDGQELEEIQTFLDESVKASCEGLMIKKDYLSGVGDSLDLVVLGAYHGKGKRTSVYGAF
LLACYNPNNDTYETVCNIGTGFSEQVLEELHKQLSEITIDRPKPFYSHSSGGQHQPDVWF
EPRYVWEVKTADLTLSPRYKAGAKEGVDPSGDKGISLRFPRFIKLRDDKKPDEATSSRQV
AEMYRKQESVTKNKGPAADDDFEY
NT seq 2595 nt   +upstreamnt  +downstreamnt
atgccacccaagcaagcaaccttgggcaaattctttggaaaacccaatggttccaaaccc
acccctacacagcagaccaaactctccttcgctaccaaatccgcaaagaaacccaaggac
gagcctcaggacagtacagaagaggcagagtcgtcgggaaaaaatataaaggctgaaggg
gatgccaaggaaaatggagatcgttcgccggactcgaagaaacgatcacgaacagccctg
ccatctaagggcaaggcgaagagaaccccaacgaaggttaagcaggaggagcaagaagaa
cccaaggaagatctagaggaagaagcccccgtatcgaaacgaccgcgaaggaatcgtcgc
cgtattgaagaagacgaggatgaagatgaagttatgtctgatgagttggtaaaacccagc
aaagacaccaagagcaagaaaaaaccagcgaaagagtcaccagcacctactacaaagggg
aaaaaggcggccaagactcaagaggctgacgatgaggttaagtcggaggagtcagcagca
agttctgcttcagaggcggaagacgacctcgaagaaaagcctgatgttgctgcaaaggca
cgcgcaaagatacagacgaaactcaaaaccaaggccaaggatccctacccggattggaaa
gctggcacacccgttccttacgctgcgttatgtacgacattttcacttatagaactcact
acaaagcggttggagattaccgaacactgcgcgctttttctgcgacaggtcttgcgattg
acacctgaggactaccttccgactgtccttctaatgatcaacaaacttgcaccagactat
gccggtatagagctgggcattggcgagtccttgatcatgaaggccatcggggagacgaca
ggacggagtctgcaggttatcaaggcagaccaaaaagaaatcggcgatttaggattagta
gcagtcaagagcaggtctacccagcctacaatgttcaaacccaagccgctcactgtcaaa
ggagttcataatggcctgatggatgtcgcaactgtcagcggacatggtgcacagggcaga
aaggtcgatctgatcaagaaattgctttcagccgctgatgcacactctactggcaaagtt
gatattaacaaggacaagggtggccctagtgaagccaagtatctcgttcgtttcctcgag
gggaagctccggcttggactagctgagaggacagttcttgtttccatcgctcaagccatg
atatgccacgagaaggaacaaaagggacaagtccccagtactactgagatggaacaagcg
gaatctaccctgaagactgtctataggcatgttatgacctcttcccgctgggatgttatc
atccccacgatggtcgagcacggtatcatgaatctacgggagagatgcaaactccgaccg
ggcgttcctttgaaacccatgcttgccaaacccaccaaggcaattactgaggttctagac
cggttcgagaaccagaaattcacttgtgaatacaagtacgatggcgagagagcccagata
cactatgttgcgaaagaccactcaggcgagtatatcgatgctttgccaagtgctaccaaa
gaagcagccaagggtgtagcatccatcttctcaagaaactccgaagatctgtccaagaaa
tatcctgatgtcctcgagaagcttcatacatgggttaaggaagggacaaagagcttcgtg
cttgattgcgagaccgtagcatgggatatggcggagaagaaagtgctcccattccagcag
ctcatgacgagaaagaaaaaggatgttaagactgaagatgttaaagtgaaggtttgcgtc
ttcgcattcgacctgctcttcttcaatggggaggccattgttgaaaagtctctgcgggaa
cgtcgggagcttctccacgatgccttcaccccggtagaaggagaattcgccttcgcaaca
cacatggatggccaggaactcgaagagattcaaacattccttgacgaaagtgtaaaagcc
tcttgtgaaggtttgatgatcaagaaagattacctgtcaggtgtaggagattcacttgac
ttagtagtgctcggcgcctaccatggcaaaggcaagcgtacatctgtttatggtgccttc
ctcctagcctgctacaatcctaataacgatacctatgagaccgtgtgtaacatcggcacg
ggtttctcggagcaagtccttgaggaactgcataaacagctatccgagataaccattgac
cgaccaaagcctttctactcgcattcctcaggtggccagcatcagccagacgtctggttt
gagccacggtacgtctgggaggtgaagactgcagacctaacgcttagcccaaggtacaaa
gctggcgcgaaggaaggggtagatccgtcgggagataaaggcatcagcctgcgtttcccg
agattcatcaagctcagagatgacaagaagccggacgaggcgacttcgagccgacaagtc
gccgagatgtataggaagcaggagagcgtgaccaaaaacaaggggccagcggcggatgac
gatttcgagtattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (24)   
   KEGG ORTHOLOGY (1)   
   RefGene (21)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (55)   

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