KEGG   Escherichia coli LF82: LF82_0457
Entry
LF82_0457         CDS       T00854                                 
Symbol
dead
Name
(GenBank) Cold-shock DEad box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
elf  Escherichia coli LF82
Pathway
elf03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:elf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    LF82_0457 (dead)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:elf03019]
    LF82_0457 (dead)
   03009 Ribosome biogenesis [BR:elf03009]
    LF82_0457 (dead)
Enzymes [BR:elf01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     LF82_0457 (dead)
Messenger RNA biogenesis [BR:elf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     LF82_0457 (dead)
Ribosome biogenesis [BR:elf03009]
 Prokaryotic type
  rRNA helicases
   LF82_0457 (dead)
SSDB
Motif
Pfam: DEAD Helicase_C DbpA DeaD_C ResIII CMS1 AAA_22 DRTGG
Other DBs
NCBI-ProteinID: CAP77624
Position
complement(3349791..3351728)
AA seq 645 aa
MSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGR
DVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGV
NVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM
GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSY
WTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALR
EQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGR
ALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYR
ALLGKIQPTAEGEELDLETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRN
DRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKL
FASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTGGERRGGGRGFGGERRE
GGRNFSGERREGGRGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq 1938 nt   +upstreamnt  +downstreamnt
atgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaattc
gaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgatctg
ggttacgaaaaaccatctccaattcaggcagagtgtattccacatctgctgaatggccgc
gacgtcctgggtatggcccagacggggagcggaaaaactgcagcattctctttacctctg
ctgcagaatcttgatcctgagctgaaagcaccacagattctggtgctggcaccgacccgc
gaactggcggtacaggttgctgaagcaatgacggatttctctaaacacatgcgcggcgta
aacgtggttgccctgtacggcggccaacgttatgacgtgcaattacgcgccctgcgtcag
gggccgcagatcgttgtcggtactccgggccgtctgctggaccacctgaaacgtggcact
ctggacctctctaaactgagcggtctggttctggatgaagctgacgaaatgctgcgtatg
ggcttcatcgaagacgttgaaaccattatggcgcagatcccggaaggtcatcagaccgct
ctgttctctgcaaccatgccggaagcgattcgtcgcattacccgccgctttatgaaagag
ccgcaggaagtgcgcattcagtccagcgtgactacccgtcctgacatcagccagagctac
tggactgtctggggtatgcgtaaaaacgaagcactggtacgtttcctggaagcggaagat
tttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggcagaagcc
cttgagcgtaacggctacaacagcgccgcgctgaacggtgacatgaaccaggcgctgcgt
gagcagacactggaacgactgaaagatggtcgtctggacatcctgattgcgaccgacgtt
gcggcccgtggcctggacgttgagcgtatcagcctggtggttaactacgatatcccgatg
gattctgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggccgtgctggccgt
gcgctgctgttcgttgagaaccgtgagcgtcgtctgctgcgtaacattgaacgcaccatg
aagctgaccattccggaagtagaactgccgaacgcagaactgctgggcaaacgtcgtctg
gaaaaatttgccgctaaagtacagcagcagctggaaagcagcgatctggatcaataccgt
gcactgctgggcaaaattcagccgactgccgaaggtgaagagctggatctcgaaactctg
gcagccgcactactgaaaatggcacagggtgaacgtactctgattgttccgccagatgcg
ccgatgcgtccgaaacgtgaattccgtgaccgtgatgaccgtggtccgcgcgatcgtaac
gaccgtggcccgcgtggcgaccgtgaagatcgtccgcgtcgcgaacgtcgtgatgttggc
gatatgcagttgtaccgtattgaagtgggccgcgatgatggtgttgaagttcgtcatatc
gttggtgcgattgctaacgaaggcgacatcagcagccgttacatcggtaacatcaagctg
tttgcttctcactccaccatcgaactgccgaaaggtatgccgggtgaagtgctgcaacac
tttacgcgtactcgcattctcaacaagccgatgaacatgcagttactgggcgatgcacag
ccgcatactggcggtgagcgtcgtggcggtggtcgtggtttcggtggcgaacgtcgtgaa
ggcggtcgtaacttcagcggtgaacgccgtgaagggggtcgtggtgatgggcgtcgtttt
agcggcgaacgtcgtgaaggccgcgcaccgcgtcgtgatgactctaccggtcgtcgtcgt
ttcggtggtgatgcgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (17)   

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