KEGG   Escherichia coli LF82: LF82_1197
Entry
LF82_1197         CDS       T00854                                 
Symbol
ligB
Name
(GenBank) Uncharacterized DNA ligase-like protein yicF
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
elf  Escherichia coli LF82
Pathway
elf03030  DNA replication
elf03410  Base excision repair
elf03420  Nucleotide excision repair
elf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:elf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    LF82_1197 (ligB)
   03410 Base excision repair
    LF82_1197 (ligB)
   03420 Nucleotide excision repair
    LF82_1197 (ligB)
   03430 Mismatch repair
    LF82_1197 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:elf03032]
    LF82_1197 (ligB)
   03400 DNA repair and recombination proteins [BR:elf03400]
    LF82_1197 (ligB)
Enzymes [BR:elf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     LF82_1197 (ligB)
DNA replication proteins [BR:elf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     LF82_1197 (ligB)
DNA repair and recombination proteins [BR:elf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     LF82_1197 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     LF82_1197 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     LF82_1197 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      LF82_1197 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: CAP78100
Position
complement(3861795..3863312)
AA seq 505 aa
MEDGVYDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRE
RSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANS
TLQGEIFLQRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDR
LKDLATAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPG
QAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKIQRVNIGSVRRWQ
EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFIS
RLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWH
QFNLARQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI
EWKENAQIKKLGSWLAAQQITGFEP
NT seq 1518 nt   +upstreamnt  +downstreamnt
gtggaagacggtgtttacgatcagttaagcgcccgtctcacgcagtggcaacgctgtttt
gggaacgagactcgcgatgtgatgatgccgcctttaaacggtgcggttatgcatccggtt
gcccatacgggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaa
cgtagcgatctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgg
gacgggaaactgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacg
cagaaagttcgcttaatttccgctgtgccgcaaaccgttagcgggcctttagccaacagc
acgcttcagggggaaatatttctccagcgtaaggggcatatccaacaacaaatgggggga
ataaatgcccgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgatacgcta
aactcactggctgtttttgtctgggcatggccggatggaccgcatttaatgaccgatcgt
ttaaaggatctggctaccgcaggttttactttaacgcagacgtatacccgcgcggttaaa
aatgctgatgaggttgcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtc
accgatggcgtggttgtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggc
caggcggagtggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaag
gcgattcaatttgcggtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacct
gtcatgctggatgataaaaaaatccagcgggtgaatattggttccgtcaggcgctggcag
gaatgggatattgcgcctggtgatcagatcctcgtcagccttgccggtcaggggattcct
cgcattgatgatgtggtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaac
cgctttaactcgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttca
cgcttagtctggctggggtcaaaacaggttctggggcttgatggcattggtgaggccggc
tggcgcgccctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacg
ccagagcaattacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcat
cagtttaatctggctcgtcagcagccttttactcgctgggtgatggcaatgggaataccg
ctaacccgggcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagc
acggaacagttctggcagcagctgccggggactggatcggggcgcgccagacaggttatt
gaatggaaggaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatc
acaggttttgaaccttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (3)   
   Pfam (3)   
All databases (22)   

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