KEGG   Erythrobacter litoralis HTCC2594: ELI_03015
Entry
ELI_03015         CDS       T00315                                 
Name
(GenBank) cold-shock dead-box protein A
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:5.6.2.7]
Organism
eli  Erythrobacter litoralis HTCC2594
Pathway
eli03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:eli00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    ELI_03015
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:eli03019]
    ELI_03015
   03009 Ribosome biogenesis [BR:eli03009]
    ELI_03015
Enzymes [BR:eli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     ELI_03015
Messenger RNA biogenesis [BR:eli03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     ELI_03015
Ribosome biogenesis [BR:eli03009]
 Prokaryotic type
  rRNA helicases
   ELI_03015
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1
Other DBs
NCBI-ProteinID: ABC62695
UniProt: Q2NC96
Position
634188..635924
AA seq 578 aa
MSFENLPPVLGESLAERGYSAPTPVQAAVTAPDAKGRDLIVSAQTGSGKTVAFGLALADE
LLAEIGGTPLAEKPLALVVAPTRELALQVSRELGWLYAKAGLRIATCVGGMDASKERRAL
RSGPAIVVGTPGRLRDHLERGALDLSGLVGVVLDEADEMLDMGFRDDLEEILDAAPDGRR
TLLFSATLPQQIVRLAQRYQTDALRLSLAGENRGHGDIAYQAISVAPSEIENAVVNLLRF
HEAETAICFCATRDSVRRLHATLQNRGFGVVALSGEHSQSERNQALQALRDRRARVCVAT
DVAARGLDLPTLSLVIHVEIPRDAETLQHRSGRTGRAGKKGTAAIIVPYNRRKRVESMLR
GAKIAAQWMDAPSAKDIRQQDQARLMEKLTTPTEYDEDDRALASKVMDRMAPEDIAAALV
QAHRAKLPQPEELLANTPEARAKSKAEKHRPGFEDTVWFRMGIGRRQNAEPRWLLPLICR
RGHITRNEIGAIRIGQHESWFQIPRAVAPRFADAVSRTASGDDEQDAIVIEESAEGPRME
ARQNRKHGGPAARAKPFRKGPGGKGGKRKPSSPPRKRG
NT seq 1737 nt   +upstreamnt  +downstreamnt
atgtctttcgaaaatctgccgccggtcctcggcgaatccctggccgagcgcggctactcg
gctcccaccccggtccaggcggcggtcaccgcacctgatgccaaggggcgggacctgatc
gtgtcggcccagaccgggtccggcaagacggtcgcattcgggctcgctttggcggacgaa
cttctggcggagatcggcggaacgccgctggccgaaaagccgctggcgcttgtcgtggcg
cccacccgtgaactcgcgctgcaggtcagccgggagcttggatggctttacgccaaggcg
ggcctacgcatcgccacatgcgtcggcgggatggacgcgagcaaggaacggcgcgcgctt
cgcagcggacctgccatcgtcgtcggcacgcccggccggctgcgcgatcacctcgagcgt
ggcgcgctcgacctgtcggggttggtcggcgtcgtgctcgacgaagcagacgagatgctc
gacatgggcttccgcgacgacctggaggaaatcctcgacgccgcgcctgacgggcgccgg
accttgctgttctccgccacgctgccgcagcagatcgtgcggctggcgcagcggtaccag
accgatgcgctccggctctctcttgcaggcgagaaccgcggccatggcgacatcgcttac
caggcgatcagtgtcgccccgtccgagatcgaaaacgcggtcgtgaacctgctgcgcttc
cacgaggccgaaaccgcgatctgcttctgcgcgacccgcgatagcgtgcggcggctgcac
gctaccctgcaaaatcgcgggttcggcgtggtggccctgtcgggcgaacattcccagtcg
gagcggaaccaggcgttgcaggctctgcgcgaccggcgcgcgcgcgtatgcgtcgccacc
gacgtggccgcacgtggcctcgacctgcccacgctcagcctagtgatccatgtggagatc
ccgcgcgacgccgaaacgctacagcatcgttcgggccgcaccgggcgggcgggcaagaag
ggcactgctgccatcatcgtgccgtacaatcgccgcaagcgggtcgagagcatgctgcgc
ggcgcgaagattgcggcgcagtggatggatgcaccgtcggccaaggacattcgccagcag
gatcaagcccggctgatggaaaagctgaccacgccgaccgaatatgacgaagacgaccgg
gcgctggcgagcaaggtgatggaccggatggcaccggaggatatcgccgcggcgctggtc
caggcccatcgtgcaaaactgccgcagccagaggaattgctcgccaacacgcccgaagcg
cgggccaagagcaaagccgaaaagcatcgtccgggcttcgaagataccgtgtggttccgg
atgggcatcgggcgccgccagaatgccgagccacgctggctgctgccgctgatctgtcgc
cgcgggcacattacccgcaacgaaatcggtgcgatccgcatcggtcagcacgagagctgg
ttccagattccgcgcgccgttgcccccagattcgccgacgcggtcagccgcacggcctcc
ggcgacgacgagcaggacgcgatcgtgattgaggaatctgccgaaggcccgcggatggaa
gcgcgccagaaccggaaacacggtggtccggcggcaagggccaagcccttccgcaaggga
ccgggcgggaagggcggcaaacgcaaaccatcgtcaccgccgcgcaaacgggggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (44)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (59)   

Download RDF
DBGET integrated database retrieval system