KEGG   Escherichia coli O83 H1 NRG 857C (AIEC): NRG857_18130
Entry
NRG857_18130      CDS       T02068                                 
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
eln  Escherichia coli O83:H1 NRG 857C (AIEC)
Pathway
eln03030  DNA replication
eln03410  Base excision repair
eln03420  Nucleotide excision repair
eln03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:eln00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NRG857_18130 (ligB)
   03410 Base excision repair
    NRG857_18130 (ligB)
   03420 Nucleotide excision repair
    NRG857_18130 (ligB)
   03430 Mismatch repair
    NRG857_18130 (ligB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:eln03032]
    NRG857_18130 (ligB)
   03400 DNA repair and recombination proteins [BR:eln03400]
    NRG857_18130 (ligB)
Enzymes [BR:eln01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NRG857_18130 (ligB)
DNA replication proteins [BR:eln03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NRG857_18130 (ligB)
DNA repair and recombination proteins [BR:eln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NRG857_18130 (ligB)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NRG857_18130 (ligB)
   MMR (mismatch excision repair)
    DNA ligase
     NRG857_18130 (ligB)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NRG857_18130 (ligB)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB RNA_ligase
Other DBs
NCBI-ProteinID: ADR29035
UniProt: A0A0H3ENM4
Position
complement(3836855..3838537)
AA seq 560 aa
MKVWMAILISILCWQSSAWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGV
YDQLSARLTQWQRCFGNETRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRERSDLW
VQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVRLISAVPQTVSGPLANSTLQGE
IFLQRKGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPHLMTDRLKDLA
TAGFTLTQTYTRAVKNADEVAHVRNEWWKAKLPFVTDGVVVRAAKEPESRHWLPGQAEWL
VAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKIQRVNIGSVRRWQEWDIA
PGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWL
GSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLA
RQQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKEN
AQIKKLGSWLAAQQITGFEP
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgaaagtatggatggcgatattaataagtatcttgtgctggcaatcatcggcgtgggcg
gtctgtccggcctggtcgccagccagagcacaggaagaaatttcccgcctgcaacagcaa
ataaaacagtgggacgatgactactggaaggaagggaaaagtgaggtggaagacggtgtt
tacgatcagttaagcgcccgtctcacgcagtggcaacgctgttttgggaacgagactcgc
gatgtgatgatgccgcctttaaacggtgcggttatgcatccggttgcccatacgggtgta
cgcaaaatggcggataaaaacgcattaagtctgtggatgcgcgaacgtagcgatctttgg
gtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgggacgggaaactgaac
aaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacgcagaaagttcgctta
atttccgctgtgccgcaaaccgttagcgggcctttagccaacagcacgcttcagggggaa
atatttctccagcgtaaggggcatatccaacaacaaatggggggaataaatgcccgcgca
aaagttgctggcctgatgatgcgccaggggaatagcgatacgctaaactcactggctgtt
tttgtctgggcatggccggatggaccgcatttaatgaccgatcgtttaaaggatctggct
accgcaggttttactttaacgcagacgtatacccgcgcggttaaaaatgctgatgaggtt
gcgcacgtacgcaatgagtggtggaaagcaaaattacccttcgtcaccgatggcgtggtt
gtgcgagcggcgaaagaacccgaatcccgtcattggttaccgggccaggcggagtggctg
gtggcctggaaatatcaacctgtagctcaggttgccgaagtgaaggcgattcaatttgcg
gtgggtaagagcggtaaaatatcggtggtggcgtcactcgcacctgtcatgctggatgat
aaaaaaatccagcgggtgaatattggttccgtcaggcgctggcaggaatgggatattgcg
cctggtgatcagatcctcgtcagccttgccggtcaggggattcctcgcattgatgatgtg
gtctggcgcggagcagaacgtacaaaaccgacaccaccagaaaaccgctttaactcgttg
acctgctactttgcttctgatgtttgtcaggaacagttcatttcacgcttagtctggctg
gggtcaaaacaggttctggggcttgatggcattggtgaggccggctggcgcgccctgcat
cagactcatcgctttgagcatatcttttcctggcttttattaacgccagagcaattacag
aacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcatcagtttaatctggct
cgtcagcagccttttactcgctgggtgatggcaatgggaataccgctaacccgggcggcg
cttaatgccagtgatgaacggtcctggtcgcaacttttatttagcacggaacagttctgg
cagcagctgccggggactggatcggggcgcgccagacaggttattgaatggaaggaaaat
gcgcaaatcaagaagctgggcagttggctggctgcccagcagatcacaggttttgaacct
tag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (23)   

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