KEGG   Esox lucius (northern pike): 105007963
Entry
105007963         CDS       T04894                                 
Symbol
msh3
Name
(RefSeq) DNA mismatch repair protein Msh3
  KO
K08736  DNA mismatch repair protein MSH3
Organism
els  Esox lucius (northern pike)
Pathway
els03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:els00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    105007963 (msh3)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:els03400]
    105007963 (msh3)
DNA repair and recombination proteins [BR:els03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     105007963 (msh3)
SSDB
Motif
Pfam: MutS_V MutS_III MutS_I MutS_II MutS_IV DUF3972
Other DBs
NCBI-GeneID: 105007963
NCBI-ProteinID: XP_028980700
Position
LG13:complement(37552997..37754958)
AA seq 966 aa
MQKTEITTDKAEKLRRKKSCGGDLGHQAKNWRIERRRKGSSRRIRLTLETSAPCKIFKSA
YTPLEQQYLQIKEQHKDVLLAVECGYKYRFFGDDAEKAAKELNIFCHLDHHFMTCSIPAH
RLFVHVRRLVSLGHKVGLVKQTETSAIKASGASKNSLFTRQLSALYTKSTLIGEDVNPLH
SFGDVEGGELTDVVTDPPESYLLCLSETWDKNSRQLTIGLMAVQPSTGDVVFDCFVDNSS
RSELEGRVLKVNPVEILVASDLSDSSHRLLQSIATASVQAGDVVRIEKRDNTLFDFASAM
NTVNNFYSHTQEIGSRSFSSVASLESPVICCLGPLIHYLREFNLEKVLLQHSLFQHLSCE
TNAMVLSATTLRNLEIFTNNTDGGVKGSLLWVLDHTRTPFGRRLMRKWISQPLKDVQSIC
ERQQAVCEILESDSITLPTLKALMSRLPDLERGICSIYHKKCSTQEFYLINSNLSRLGLE
LQALLPSIQSQLSSSLLRGLLLDTPDLLAPAHNFLKVLSEKAAKSGDKMELFYDLSVFPV
LQERREEIQSVLAEIQDHLREVQITLRTPTVNYVTVSGQEFLVEVKNSMKSVVPSDWVQI
SSTKAVSRYQSPYLVEKCRRLSQLKEKMLIDSKKEWTNFLNQFGEYYYTMKKAVCNLATI
DCLYSFAEVAKEGNYCRPLVQEGDRQIVIKDGRHPVIDLLMGEHTQYVPNDTELQGDRRR
TMIITGPNMGGKSSYIRQVALLCIMAQVGSYVPATEASLGILDGIYTRMGASENIYKGHS
TFMEELTETSEIVAQASERSLVILDELGRGTSTHDGTAIAYATLEYFIREVKSLTLFVTH
YPPLCELEKVYPRHVGNFHMAFLLNEPEFVAKDGELKPDFITFLYQLTEGAAGRSYGLNV
AGLADIPEDVLHIATCKAQELENTINSRRKSKRLLSELWSIKDRKRLLDWVQLNSHVQRH
KSLVAV
NT seq 2901 nt   +upstreamnt  +downstreamnt
atgcaaaagaccgaaataacaacagacaaagcagagaagttgagaagaaagaaaagttgt
ggcggggacctgggccatcaagcaaaaaattggagaatcgagaggaggaggaaggggtcc
tccaggagaatcaggctaacattagagactagcgccccctgtaaaatatttaagagtgca
tacactcctctggagcagcagtacctgcagattaaagagcaacataaggacgttcttttg
gctgtggagtgtggctataagtacaggttcttcggggacgatgcagagaaagcggcaaag
gaactgaacatcttttgtcacctggaccatcacttcatgacatgcagcatccctgcacac
cgattgttcgttcatgtacgacgactcgtctcactgggccacaaggtgggcttagtgaag
cagacagagacctcagctattaaggcctcaggagccagtaagaactctctattcacccgc
caactcagtgctctctacacaaagtctacactgattggggaagatgtgaacccattgcac
agttttggtgatgtggaaggtggggagcttactgatgtggtgacagatcctccagagagt
tacttgctctgtctcagtgagacctgggataaaaacagcagacaactcaccattggtctg
atggcggtgcaaccaagtacaggtgatgtggtgtttgattgttttgtggacaactcgtcg
cgatcagagctggagggtcgtgtcttaaaggtcaatcctgtagaaatcttggtggcttct
gatctttcagactcctcacacagactcctgcaaagcatagcaactgccagtgtgcaggct
ggggatgttgtacgtatagagaagagggacaatactctgtttgactttgcctccgcaatg
aacactgtcaataacttctacagtcacactcaggaaataggttccagatcgttctccagt
gttgcctcgttggagagccctgtgatctgctgtcttggtcctctcatccactatctgaga
gagtttaatctggagaaagtactcctacagcacagtttgttccagcatctatcctgtgag
acaaacgctatggtcctcagtgctaccactcttagaaacctggagatattcaccaacaat
acagatggaggtgtaaagggaagtttgttgtgggtgttagaccacacccgaactccattt
gggaggagactgatgaggaagtggataagccagcccctcaaagatgtacagtctatatgt
gagagacaacaggctgtttgcgagattctggaatctgattccatcaccttgcccaccctt
aaagccctgatgtcccgactgccagacctggagagaggaatctgcagtatctaccataag
aagtgttccacacaggagttctacctcatcaacagtaatctctcacggcttgggttggaa
ctccaggctttgctcccatccatccaatcacagctcagctcttctctgctccgaggcctc
ctattggacacacctgatctgctggctcctgcccacaacttcttaaaagttctcagtgag
aaggcagccaagtcaggggataagatggagctgttctatgacctatcggtcttcccagtg
ctccaggaaagaagagaggaaatccaatctgttctggctgaaatacaagatcacctgagg
gaggttcaaattacactcaggacccccactgtaaactacgtcacagtcagcgggcaagag
ttcttggtagaggtgaagaactctatgaagtctgtggttccatctgattgggttcagatc
agtagtactaaagcagtgagtagataccagtctccttatctggtagaaaaatgtagaaga
ctgtcccagctcaaagaaaagatgctcattgacagcaagaaagaatggaccaactttctc
aatcaatttggggagtattactacactatgaagaaagctgtttgtaacctagccaccatc
gactgcctgtactcattcgctgaggtggctaaggagggaaactactgcaggccattggtg
caagagggagatcgtcagattgtgattaaggatggtcgacatcctgtcatagatctgttg
atgggagaacacacacagtatgtccccaatgacacagaactacagggtgacaggaggagg
actatgataataacaggacctaacatgggcggtaagagctcttacatccgccaggtggca
ctactctgcatcatggcccaagtaggctcatatgtaccagctacagaggccagcttgggc
atccttgacggcatatacacaaggatgggggcatctgaaaacatatataagggccacagc
acattcatggaggagctgacagaaacctcagaaattgttgcccaggcatctgagaggtct
ttggtcattctggacgaattgggccgaggcaccagcacccatgacgggacagccatcgcc
tatgctactctggagtacttcatcagagaagtgaagtctctaactctgtttgtgactcac
taccctccactgtgtgagctggaaaaggtgtatcctaggcatgtaggaaacttccacatg
gcctttctacttaatgaaccagaattcgtcgcaaaagatggtgagttgaagccagatttc
atcaccttcttgtatcagctaactgagggggcagctggacggagctatgggctaaacgtt
gctggtttagctgatattcctgaagatgttctacacatcgccacctgtaaagcacaagag
ctagagaacactatcaactcacgaagaaagagcaagcggttgttatctgaactgtggagc
atcaaagacagaaaacgtctgttagactgggtgcagctgaactcacacgtacaaagacat
aaatccctggttgcagtgtga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (10)   
   RefSeq(nuc) (8)   
   GenBank (1)   
   EMBL (1)   
Protein domain (6)   
   Pfam (6)   
All databases (46)   

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