KEGG T04744: BBD33

Elizabethkingia meningoseptica: BBD33_04750

Entry

BBD33_04750       CDS       T04744

Name

(GenBank) transcription-repair coupling factor

K03723

transcription-repair coupling factor (superfamily II helicase) [EC:5.6.2.4]

Organism

emg Elizabethkingia meningoseptica

Pathway

emg03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:emg00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BBD33_04750
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:emg03400]
    BBD33_04750
Enzymes [BR:emg01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BBD33_04750
DNA repair and recombination proteins [BR:emg03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     TRCF (transcription-repair coupling factor)
      BBD33_04750

SSDB

Motif

Pfam:

DEAD TRCF Helicase_C UvrB_inter CarD_TRCF_RID ResIII RecG_dom3_C UB2H Maelstrom

Other DBs

NCBI-ProteinID:

AQX04600

Position

1001366..1004722

AA seq 1118 aa
MQLTSIKKTLLPDLLKKQWGKEVFDTLREKEKISIKGAAGSSINVIAAEYFVSFNQSMLI
VLDDKEDALYATAELEELCGKENVLYFPATFLEPYQIEKTQNANRVLRTEVINQLNSSKS
PKVIVAYAAALSEKVVKKEEFGKFSHTIKVGELLDFDFIDELLNHYKFNRTDFVSEPGEF
SVRGGIIDVFSYAYEYPFRVSFFGNEVDSIRTFDIESQLTQEKVDEFQLVSAIQDVSGDT
AKTPLFGLLPKDAVIFTKNAFLGVKHIRKFFSKAEDIYQTLHQDIKYSEPKAIFVSEDEF
LNHINQFVWADFTSDTLKSSRAELQLKLTQQPVFNKNFEWLIQDLEDKLEKGYDAWISFS
SEKQKERLESIFEELEKNIPFRSFASELHEGFVDNENKISVYTDHQIFDRYQRYKAKNAF
AKSEQLTLKDLMSLKVGDYITHIDHGIGKFMGLVKVNNNGKVQECFKLSYKNGDLLYVSI
HALHKISKYNGPEGKAIVLSKLGSSAWKTLKQKTKARVKQIAFDLIKLYAQRKSAKGFAF
SPDGYMQNELEASFIYEDTPDQEKATMDVKADMQADTIMDRLVCGDVGFGKTEVAIRAAF
KAAVDGKQVAILVPTTILAFQHFRSFKERLKDFPVEISYLNRFRTAKQKKETLEGLASGK
IDIVIGTHQLVGASVKFKDLGLLIIDEEHKFGVAIKDKLKAMKTDIDTLTLTATPIPRTL
QFSLMAARDLSVIKTPPPNRQPVDTRLVGFNEEILRDAVSYELQRDGQVYFINNRIENLK
EIAGLIQRLVPDARVITGHGQMDGKQLEANMMDFMEGKYDVLVSTTIVESGLDVPNANTI
FINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPMDLVSADSRKRLEAIEQFSDLGSGF
HIAMKDLEIRGAGDLLGGDQSGFINEMGFDTYQKIMQEALEELKDEDMEGLFQNEEERQK
LFSSTKDVNIDTDLELMLPDDYVNSTEERLLLYQKLAEVKNSAELNRYEYELKDRFGALP
KEAVNLLKSIELKWLAADIGFDKIVMKNGIFLGYFPGNPQDKFYQSERFKKIIQYLGANP
QHAQLKEKHSPEGNQLMMRKDRISNVDEVNALLTSMLN

NT seq 3357 nt +upstreamnt +downstreamnt
gtgcaattaacttctattaaaaaaacattattacccgatttgctaaaaaaacaatggggt
aaggaagtctttgatacgcttcgggaaaaagaaaaaataagcataaaaggtgcggcaggt
tcttccatcaatgttatagctgcagaatattttgtgtctttcaatcagtctatgcttatt
gtactggatgataaagaggatgcgttatatgcaacagcagagcttgaagagctctgtgga
aaagaaaatgttttgtatttcccggctacctttttggagccttatcagatagaaaagaca
caaaatgcaaacagagtattgcggacagaagttattaatcagctgaattcctccaaatca
cccaaagttattgtggcttatgcagctgctctttctgaaaaagtagtgaagaaagaagag
ttcggaaaattctcacatacaataaaagtcggggagctgctggattttgactttatagat
gaacttctgaatcattataaatttaatcggacagattttgtttcggaacccggagaattt
tctgtacgcggaggaattattgatgtcttttcctatgcatatgaatatccgttcagggta
agcttttttggtaacgaagtggatagtatccggacttttgatatagaaagccagctgacg
caggaaaaagttgatgaatttcaattggtttcagcaatacaggatgtttccggtgataca
gcaaaaacacctttgtttggattacttcccaaagatgccgtaatatttactaagaatgct
tttttaggcgttaagcatatccgtaagtttttttcaaaggcagaagatatttatcagact
ttacaccaggatataaaatatagtgagcctaaggctatttttgtttcagaagatgaattt
ctgaatcatattaatcaatttgtgtgggcagattttacgtctgatacactgaagtcttca
cgggcagaacttcagctaaaactcacgcagcagcctgttttcaataaaaactttgaatgg
ctgattcaggatcttgaagataaactggagaaggggtatgatgcatggatttctttttct
tcggagaaacaaaaagagcgtctggaaagtatttttgaagagctggaaaaaaatatcccg
ttcagaagctttgcctcagaacttcatgagggctttgtagataatgaaaataagatttct
gtatataccgaccatcagattttcgacaggtaccaacgctacaaagcaaagaatgctttt
gcaaaaagtgaacagttaacactaaaggatctgatgtccctgaaagtgggagattatatt
acccatattgatcacggaatcggtaagtttatgggactggttaaggtcaataacaatggt
aaggtgcaggagtgttttaaactatcctataaaaacggtgacttgctctatgtaagtatt
catgcgctacacaagatatccaaatataatggcccggaggggaaagctattgtactgagt
aaactgggatcctccgcatggaaaaccctgaaacagaaaacaaaagcaagagttaagcaa
attgcatttgacctgattaagctgtatgcgcagcgtaaaagcgcaaaaggttttgcgttt
tctccggatggttatatgcagaatgagctggaggcttcatttatttatgaggatacaccg
gatcaggagaaggcaacaatggatgtgaaagcagacatgcaggctgatactataatggac
agactggtgtgtggggatgtagggtttggaaaaacagaagtggcgatccgtgcagcattt
aaagcagctgtagatggcaagcaggtagcgattctggtgcctactacaattttggcattt
cagcatttcaggagctttaaagaaagattaaaagatttccctgttgaaatttcatacctc
aaccgtttcagaacggcaaagcagaaaaaagaaacacttgaaggattggcttccggaaaa
atagatattgttatcgggacgcatcaattggtaggtgccagcgtgaagtttaaagatctg
ggcttactgattattgatgaggaacataaatttggcgttgcgataaaggataagctgaaa
gccatgaaaacggatattgatacgctgacattgacggcaacacctattccaagaacatta
cagttttctcttatggccgcaagagatctttcggtgattaagactcctccgccaaaccgt
cagccggttgataccagactggtagggtttaatgaggagattctcagagatgctgtcagt
tacgaattgcaacgcgacggacaagtctattttattaataaccggattgaaaatcttaaa
gagattgcaggacttattcagcgcctggtgcctgatgcgagagtaattaccggccacgga
cagatggatggtaagcagctggaggctaatatgatggattttatggaagggaaatacgat
gttctggtttctacaactattgtagaaagtggattggatgtccctaatgccaacactatt
ttcattaatgatgcacaacgcttcggaatggcggaccttcatcagatgcgcggtagagtc
ggacggagcaacagaaaagcattttgttatctgattacgccgcctatggatctggtttct
gcggattcgcgtaaacgtctggaagcaattgagcagttttctgatttgggaagcggattc
catatcgcgatgaaagatttggaaatacgcggtgcaggtgatttgctggggggagaccag
agcgggtttattaacgaaatgggatttgatacctatcagaagattatgcaggaggcactg
gaagaactgaaggatgaagatatggaaggcttattccagaatgaggaagaacgtcagaaa
ctctttagctcgactaaagatgtcaatattgatacggatctggaactgatgttgccggat
gattatgtaaacagtaccgaggaacgtttgctattataccaaaagctggctgaagtgaaa
aattctgcagagctgaatcgttatgaatatgaactgaaagacagattcggagcgctgcca
aaagaagctgtgaatttgttgaagagtattgagttaaagtggttagcggctgatattggt
tttgataaaattgtaatgaaaaacggaatatttctgggatacttccctggcaatccacag
gataagttttatcagagtgaaaggtttaaaaagattattcagtatcttggtgccaacccg
cagcatgcacaattaaaagaaaaacattcaccggaaggaaatcagctgatgatgcgtaag
gacagaatatcgaatgtagatgaggtgaatgctttgttaacgagtatgctgaattaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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