KEGG   Elizabethkingia meningoseptica: BBD33_09990
Entry
BBD33_09990       CDS       T04744                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
emg  Elizabethkingia meningoseptica
Pathway
emg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:emg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBD33_09990
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:emg03019]
    BBD33_09990
   03400 DNA repair and recombination proteins [BR:emg03400]
    BBD33_09990
Enzymes [BR:emg01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BBD33_09990
Messenger RNA biogenesis [BR:emg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BBD33_09990
DNA repair and recombination proteins [BR:emg03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      BBD33_09990
SSDB
Motif
Pfam: DEAD Helicase_C RecQ-1-like_HTH RQC HRDC RecQ_Zn_bind ResIII HTH_40 Helicase_Sgs1
Other DBs
NCBI-ProteinID: AQX05556
UniProt: A0A1V3TXY5
Position
2172051..2174258
AA seq 735 aa
MNTKSANIAESLKKYFGFTTFKGYQEQIISSLLEGNDVFVLMPTGGGKSLCYQLPALMSE
GTAIVVSPLIALMKNQVDAVNGLSSEEGVAHVLNSSLNKTQTKTVMDDIRNGRTKLLYVA
PESLIKEEYIDFFREVPISFFAIDEAHCISEWGHDFRPEYRNLKSIIDKIADVPVIALTA
TATPKVQDDIQKTLGMANALVYKESFNRPNLFYEVRPKVNIDKEIVKFIKSQNGKSGIIY
CLSRRKVEEFAQLLQVNGINALPYHAGLDAKTRVANQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDIPKSLESYYQETGRAGRDGGEGHCIAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYVETSMSRRQYLLYYFGEKFDPVNGLGAKMCDNSVNPPVLRDASGDLKKV
LSLVNELGQKFRAKDLVAVIVGKENAVTKSYKLENNEHFGSGKDKEDNYWKSIIRQAVVQ
DFLLKDIETYGVLKLTKKGLDCIDGKLKSKFEIAEDRVYNLAETAKSSAEVSMGSAARGL
DDKLFSLLKDVRRKVAQKYNIPPYTVFQDPSLEDMTVQYPITIDEISKIYGVGEGKAKKF
GKEFADFIKKYVEENDIDRPDDMVLKQVANKSSHKVFIIQNTDKKIDLEDIAKAKNITMV
ELLSEMESIVYQGTKLNIDYYIEENIDEDIVEEFMEFMMESESDSMKILCSEFSDELSDE
EIRMLRIKFISDVAN
NT seq 2208 nt   +upstreamnt  +downstreamnt
atgaatacaaaatctgcgaacatagcggagtcattgaaaaagtattttggctttacaaca
ttcaaaggatatcaggaacaaattatctcttcattgttggaagggaatgatgtttttgta
ctgatgcctactggtggtggcaaatcattatgctaccagcttccggcattaatgagtgag
ggaacagctattgtggtatcaccactaatagcattaatgaaaaatcaggtggatgccgtt
aacggactttcttccgaagaaggagtggcacacgttcttaattcttcgttgaacaaaaca
caaacgaagactgtgatggatgatatccgaaatggaagaactaaattactttatgtagcc
cctgaatctttgatcaaggaagagtacatagactttttccgggaagttccaatttcattt
tttgcaatagatgaagcgcactgtatttctgaatggggacacgatttccgaccggaatac
agaaacctgaagagtattatcgataaaatagcagacgttcctgttattgcgcttaccgct
acagcaacaccaaaagttcaggatgatatccagaaaacactgggtatggcaaacgctctt
gtatataaagagtctttcaacagaccaaatttattttacgaggtacgcccgaaagttaat
attgataaagagatcgtaaaatttatcaaatcccagaatggtaaatcaggaattatttac
tgtctgagccggagaaaagtggaagagttcgctcaactgcttcaggtgaacggtattaat
gctttaccataccatgcgggactggatgccaaaacacgtgttgccaatcaggataaattc
ctgatggaggaagtagatgtcatcgtagcaaccattgcctttggaatgggaattgacaag
ccggatgtaaggtttgttattcattatgatataccaaaaagtctggaaagctactatcag
gaaactggtcgagcgggaagagacgggggagaaggacattgtattgctttctatgatcct
aaagatattgaaaagcttgaaaaatttctggcacagaagccggtttcagaacgggaaatt
ggccttcagcttctgaatgaagttgtgggttatgtagaaacgtctatgagccgacgccaa
tatttactatattattttggtgaaaaatttgatccggtaaacggattaggtgccaaaatg
tgtgacaattcggtaaacccgcctgttttaagagatgcaagcggtgatctgaaaaaagtt
ttatctctggtaaacgagttgggacaaaaattcagggctaaagatcttgttgcggttatc
gtcggaaaagaaaatgccgttaccaaatcgtacaagctggaaaacaatgaacatttcggc
agcgggaaagataaagaggataattactggaaatctattatcaggcaggctgttgttcag
gattttttactgaaagatattgagacatatggtgtcttaaagcttacgaagaaaggctta
gactgtatagatggtaagctgaaatcgaagtttgaaatcgctgaagaccgtgtctataat
cttgcagaaaccgctaaatcatctgcggaagtaagcatgggaagtgctgcaagaggtttg
gatgataagttattcagtctcttaaaagacgtaagaagaaaagtcgcacagaaatataat
attccgccttataccgtttttcaggatccgagtctggaagatatgaccgtacaatatcct
attacaattgacgaaatatccaagatctacggagtaggtgaaggaaaggctaaaaaattc
ggaaaagaatttgccgattttataaaaaaatatgtagaagaaaacgatatcgaccgaccg
gacgatatggtattaaagcaggtggctaataaatccagccataaagtgtttattattcag
aatactgataagaagattgatctggaagatatagcaaaagcgaagaatataacgatggtt
gagctgctttctgaaatggaaagcattgtttaccagggaaccaagctgaatatcgattat
tatatcgaagaaaatattgacgaggatattgttgaagagtttatggagtttatgatggaa
tctgaaagcgacagcatgaagattctatgctccgaattttctgatgaactctctgatgaa
gaaatccgaatgctgcgtataaaattcattagcgatgtagcgaactaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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