KEGG T04405: AKI40

Enterobacter sp. FY-07: AKI40_1780

Entry

AKI40_1780        CDS       T04405

Symbol

sbcB

Name

(GenBank) Exonuclease I

K01141

exodeoxyribonuclease I [EC:3.1.11.1]

Organism

enf Enterobacter sp. FY-07

Pathway

enf03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:enf00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    AKI40_1780 (sbcB)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:enf03400]
    AKI40_1780 (sbcB)
Enzymes [BR:enf01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.1  exodeoxyribonuclease I
     AKI40_1780 (sbcB)
DNA repair and recombination proteins [BR:enf03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA exonucleases
     AKI40_1780 (sbcB)
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     AKI40_1780 (sbcB)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      AKI40_1780 (sbcB)

SSDB

Motif

Pfam:

Exonuc_X-T_C RNase_T

Other DBs

NCBI-ProteinID:

AMO48190

Position

complement(1826976..1828400)

AA seq 474 aa
MSDSTATPTFLFHDYETFGTSPALDRPAQFAAIRTDADFNIIGEPEVFYCKPADDYLPQP
EAVLITGITPQIARARGDNEAAFAKRIHDLFTVPKTCVLGYNNVRFDDEVTRNIFYRNFY
DPYAWSWQNNNSRWDLLDAMRACYALRPDGIVWPENEDGLPSFRLEHLTKANGIEHSNAH
DAMADVYATIAMAQLVKAKQPKLFDYLFSHRNKQKLAALIDVPQMKPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLAGDMSPLLTLDADALRERLYTPKADLGDNAAVPVKLV
HLNKCPVLAQANTLRPQDAERLGINRQQCLDNLQHLRDNPQVREKVVAIFAEAEPFTPSE
NVDAQIYNGFFSDADRAAMKILLETEPRNLPALDITFADSRIEKLLFNYRARNFPGTLDE
NEQQRWLQHRRNVFTPEYLQQYADQLQALFQQHDGDSEKQALLKALWQYAEEIV

NT seq 1425 nt +upstreamnt +downstreamnt
gtgtctgattccaccgcaacacccacttttctctttcacgactacgaaacgttcggcacc
agcccggcgctggatcgcccggcgcagttcgccgccatccgcaccgatgcggatttcaac
attatcggcgagccggaggtgttctattgtaaacccgccgacgactatctgccgcagccg
gaagcggtactaataaccggtatcactccgcagatagcccgcgccagaggcgacaatgaa
gccgcttttgccaaacgcattcatgacctgtttaccgtgccgaaaacctgcgtgctcggt
tacaacaatgtgcgctttgacgatgaggtcacgcgcaatatcttctatcgcaacttctac
gatccctatgcatggagctggcagaacaacaactcgcgttgggacttgctggatgcgatg
cgcgcctgttacgcgctgcgcccggacggcattgtctggccggaaaatgaggatggcctg
ccgagctttcgccttgaacacctgaccaaagccaacggcatcgaacacagcaacgcgcat
gatgcgatggccgacgtctatgccaccattgccatggcgcagttggtcaaagcgaaacag
ccgaagttatttgattatctgttcagccaccgcaacaagcagaagctggcggcgctgatt
gatgtgccgcaaatgaagccgctggtgcacgtctctggcatgtttggcgcgtggcgcggc
aataccagttgggttgcgccgctggcctggcacccggaaaaccggaatgcggtgattatg
gtcgacctggcgggcgatatgtcgccgttactgacgctggatgccgatgcgctgcgcgag
cggctctacaccccgaaagccgacctgggcgataacgccgccgtgccggtgaaactggtg
catctgaacaagtgcccggtcctggcacaggccaatacattgcgccctcaggatgcggaa
cggctgggcatcaaccgccagcagtgcctcgataatctacaacacctgcgcgataacccg
caggtgcgggaaaaagtggtggcgattttcgccgaggccgagcctttcacgccctcagag
aatgttgatgcgcagatctacaacggctttttcagcgacgccgatcgcgcggcaatgaaa
attctgctggaaaccgagccgcgcaatttgcccgctctggatatcacctttgccgacagc
cgtattgagaagttgctgtttaactaccgtgcacgtaatttccctggtacgctggatgaa
aacgagcagcagcgctggcttcagcaccgtcgcaatgtctttacccctgagtaccttcaa
cagtacgccgaccagctacaagcactgttccagcagcacgatggcgacagcgaaaaacag
gcgctgctgaaagcgctatggcagtatgccgaagagatcgtgtga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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