KEGG   Endosymbiont of unidentified scaly snail isolate Monju: EBS_1589
Entry
EBS_1589          CDS       T04530                                 
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
enm  Endosymbiont of unidentified scaly snail isolate Monju
Pathway
enm03030  DNA replication
enm03410  Base excision repair
enm03420  Nucleotide excision repair
enm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:enm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    EBS_1589 (ligA)
   03410 Base excision repair
    EBS_1589 (ligA)
   03420 Nucleotide excision repair
    EBS_1589 (ligA)
   03430 Mismatch repair
    EBS_1589 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:enm03032]
    EBS_1589 (ligA)
   03400 DNA repair and recombination proteins [BR:enm03400]
    EBS_1589 (ligA)
Enzymes [BR:enm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     EBS_1589 (ligA)
DNA replication proteins [BR:enm03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     EBS_1589 (ligA)
DNA repair and recombination proteins [BR:enm03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     EBS_1589 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     EBS_1589 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     EBS_1589 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      EBS_1589 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 DNA_ligase_ZBD PTCB-BRCT RNA_pol_A_CTD BRCT_2 DZR_2
Other DBs
NCBI-ProteinID: BAN69471
UniProt: S6BJY8
Position
complement(1717285..1719510)
AA seq 741 aa
MSDDIRQRIEALRREIDYHNYRYYVLDDPEIPDAEYDRLMRELQALEAEHPELVTPDSPT
QRVGAKPLSAFAEVRHAVPMLSLDNAFSDQELDDFDRRVRERLGMQRVDYSAEPKFDGLA
ISLRYERGVLVQGATRGDGHVGEDVTQNVRTIRAVPLRLIGEGWPEVLEVRGEIVMPKSG
FEALNRRQLERGEKPFANPRNAAAGSLRQLGSRVTAERPLTFFAYGVGEVVGHPMRETHS
GNMALLRDWGLPIPRELESCAGIDACHAYYRRMLERRPELDYDIDGVVYKVDRLDWQQAL
GFVARAPRWAIARKFPAEEALTVVEDVDFQVGRTGALTPVARLKPVFVGGVTVSNATLHN
MDEVECKDIWVGDTVIVRRAGDVIPEVVRSLPERRPAGARRVVLPAQCPVCGSAAIRPEG
EAIARCSGGLFCPAQRKEAIKHFASRKAMDIEGLGDKLVEQLVDRGLVETPADLYQLTRE
QLIGLERMGEKSADNLLAALARSRETTLGRFLFALGILGIGETMAGVLAQTLGSLEAIRS
LTLSDLVEIRPSQARALHAALEAAGLAPDTPTARAPPPQGLKWCRPVHLALLAERFPTLG
ELLDAGPEALANTPSVRIEGVGEVLAEKIVTFFRQPHNNEVIDALLEAGVHWPDPAGERA
AEQPLAGLTFVLTGKLGRPRDHYKQRLLALGAKVSGSVSKKTDYVVAGEDPGSKLDKAQS
LGVSVIDEARLLALLGEPAEG
NT seq 2226 nt   +upstreamnt  +downstreamnt
ttgagcgacgacatccgccagcgcatcgaggccctgcgccgcgagatcgactaccacaac
taccgttactacgtgctcgacgatcccgagatcccggatgccgagtacgaccgcctgatg
cgcgagctgcaggcgctggaggccgaacacccggaactggtcactcccgattcgccgact
cagcgggtgggcgcgaagcccctgtcggccttcgccgaggtgcgccacgcggtacccatg
ctgtcgctggacaacgcgttcagcgaccaggagctcgacgacttcgaccgccgggtgcgc
gagcgcctggggatgcagcgcgtcgattactcggccgaacccaagttcgatggcctggcg
atcagcctgcgctacgagcggggcgtgctggtgcagggcgcgacccgtggcgacggccac
gtcggcgaggacgtgacccagaacgtgcgcaccatccgcgccgtgccactgcgcctgatc
ggcgaaggctggcccgaggtgctcgaggtgcgcggcgagatcgtgatgcccaagagcggt
ttcgaggcgctcaaccggcgtcagctcgagcgtggcgagaagcccttcgccaacccgcgt
aatgcggctgccggcagcctgcgccagctcggttcccgggtcactgccgagcggccgctg
accttctttgcctacggagtcggcgaggtggtcggtcatcccatgcgcgagacccacagc
ggcaatatggccctgctgcgcgactgggggctgcccatcccgcgcgagctcgaatcatgt
gcgggcatcgatgcctgccatgcctactatcggcgcatgctcgagcggcggcccgaactg
gactacgacatcgacggcgtggtctacaaggtcgaccgcctcgactggcagcaggcgctg
ggtttcgtggcgcgtgcgccgcgctgggccatcgcgcgcaagtttcctgccgaggaggcg
ctcaccgtggtcgaggacgtggacttccaggtcgggcgcaccggcgcgctcacgccggtc
gcgcgactcaagccggtattcgtcggcggggtcacggtgagcaacgccaccctgcacaac
atggacgaggtcgaatgcaaggacatctgggttggtgacactgtcatcgtgcgtcgcgcc
ggcgatgtcatccccgaggtggtgcgcagtctgcccgaacgccggcctgccggtgctcgc
cgcgtggtgctgcccgcgcagtgcccggtctgcggctcggcggcgatccgtcccgagggc
gaggccattgcgcgttgttccggcggcctgttctgcccggcgcagcgcaaggaggcgatc
aagcacttcgcctcgcgcaaggccatggacatcgagggcctgggcgacaagctggtcgaa
caactggtggatcgcggcctggtcgagaccccggccgatctctaccagctcacccgtgaa
caactgatcggcctggagcgcatgggcgagaagtcggccgacaacctgctggccgcgctt
gcgcgttcccgggagaccaccctgggccgtttcctgttcgccctgggtatcctcggcatc
ggcgagaccatggccggggtgctggcgcagacattgggatcgctggaggcgatccgctcg
ctgaccctgagcgacctggtcgagatccgccccagccaggccagggccctgcatgcggcc
ctggaagctgccgggctggcgccggataccccgaccgcccgggcgccgccgccacagggc
ttgaagtggtgccggccggtgcatctggcactgctcgccgagcgtttcccgacgctgggc
gagctgctcgatgccgggcccgaggcactggccaacacgccttcggtacgcatcgagggg
gtgggcgaggtgctggccgagaagatcgtcaccttcttccgccagccacacaacaacgag
gtcatcgacgccctgctcgaagcgggggtgcactggcccgaccccgccggcgaacgcgct
gccgaacagccgctggccggactcaccttcgtgctcaccggcaagctgggtcgtccccga
gaccactacaagcaacgcctgctggcgctgggtgcgaaggtctccggcagcgtgtcgaaa
aagaccgactatgtcgtcgccggcgaagaccccggcagcaagctcgacaaggcgcaatct
ctcggcgtgagtgtgatcgacgaggcgcggttgctggcgttgctgggcgagccggcggaa
ggatga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (52)   
   KEGG ORTHOLOGY (1)   
   RefGene (49)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (79)   

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