| Entry |
|
|---|
| Name |
pectate lyase;
polygalacturonic transeliminase;
pectic acid transeliminase;
polygalacturonate lyase;
endopectin methyltranseliminase;
pectate transeliminase;
endogalacturonate transeliminase;
pectic acid lyase;
pectic lyase;
alpha-1,4-D-endopolygalacturonic acid lyase;
PGA lyase;
PPase-N;
endo-alpha-1,4-polygalacturonic acid lyase;
polygalacturonic acid lyase;
pectin trans-eliminase;
Polygalacturonic acid trans-eliminase |
|---|
| Class |
Lyases;
Carbon-oxygen lyases;
Acting on polysaccharides
 |
|---|
| Sysname |
(1->4)-alpha-D-galacturonan lyase |
|---|
| Reaction(IUBMB) |
Eliminative cleavage of (1->4)-alpha-D-galacturonan to give
oligosaccharides with 4-deoxy-alpha-D-galact-4-enuronosyl groups at
their non-reducing ends [RN:R08694] |
|---|
| Reaction(KEGG) |
R08694 > R02361 R06240(G)
 |
|---|
| Comment |
Favours pectate, the anion, over pectin, the methyl ester (which is
the preferred substrate of EC 4.2.2.10, pectin lyase). |
|---|
| Pathway |
PATH: ec00040 Pentose and glucuronate interconversions |
|---|
| Orthology |
KO: K01728 pectate lyase |
|---|
| Genes |
ATH: AT1G30350 AT3G09540 AT3G24670 AT3G27400 AT3G55140 AT4G13710
AT5G09280 AT5G55720
OSA: 4326883(Os01g0546800) 4335013(Os04g0137100)
MGR: MGG_04348
AFM: AFUA_1G01120 AFUA_2G00760 AFUA_7G06400 AFUA_8G05910
ANG: An10g00870(plyA)
YPE: YPO3994(pelY)
YPK: y3834
YPM: YP_3357(pelY)
YPA: YPA_3822
YPN: YPN_3644
YPG: YpAngola_A4065
YPS: YPTB3834(pelY)
YPI: YpsIP31758_4066
YPY: YPK_0096
YPB: YPTS_4050
YEN: YE4069(pelY)
ECA: ECA2135 ECA4067(pelA) ECA4068(pelB) ECA4069(pelC) ECA4070(pelZ)
PCT: PC1_2170 PC1_3860
PWA: Pecwa_2511
ENT: Ent638_0482
DDA: Dd703_0352 Dd703_0353 Dd703_2763 Dd703_2764
DZE: Dd1591_0270 Dd1591_0271 Dd1591_1090 Dd1591_1091
XCC: XCC0644(pel) XCC0645(pel) XCC2815(pelB)
XCB: XC_1298 XC_3590 XC_3591
XCA: xccb100_3710(pel2) xccb100_3711(pel3)
XCV: XCV2278 XCV2569 XCV3132(pel1) XCV3687(pel2)
XAC: XAC2373(pel) XAC2986(pelB) XAC3562(pel)
XOO: XOO0821(pel) XOO2265
XOM: XOO_0747
CJA: CJA_1277(pelC)
MMW: Mmwyl1_0132 Mmwyl1_2362
AAV: Aave_3434
SME: SM_b21239
SMD: Smed_6139
BSU: BSU07560(pel)
BHA: BH0698
BLI: BL03760(pel)
BLD: BLi01404(pel)
BCL: ABC0063(pelB) ABC1141
BAY: RBAM_007720(pel)
BPU: BPUM_3515(pelB)
LCI: LCK_00931(pel)
SCO: SCO1880(SCI39.27c)
TFU: Tfu_0153
RBA: RB3417 RB5312(pel) RB5316
TMA: TM0433
 |
|---|
| Structures |
PDB: 1AIR 1BN8 1EE6 1GXM 1GXN 1GXO 1JRG 1JTA 1O88 1O8D
1O8E 1O8F 1O8G 1O8H 1O8I 1O8J 1O8K 1O8L 1O8M 1OOC
1PCL 1PE9 1PLU 1R76 1RU4 1VBL 2BSP 2EWE 2NZM 2O04
2O0V 2O0W 2O17 2O1D 2PEC 2QX3 2V8I 2V8J 2V8K 3B4N
3B8Y 3B90 |
|---|
Reference
Authors
Title
Journal
Organism
|
1 [PMID:13860094]
ALBERSHEIM P, KILLIAS U.
Studies relating to the purification and properties of pectin
transeliminase.
Arch. Biochem. Biophys. 97 (1962) 107-15.
Pisum sativum |
|---|
Reference
Authors
Title
Journal
Organism
|
2 [PMID:14235514]
EDSTROM RD, PHAFF HJ.
PURIFICATION AND CERTAIN PROPERTIES OF PECTIN TRANS-ELIMINASE FROM
ASPERGILLUS FONSECAEUS.
J. Biol. Chem. 239 (1964) 2403-8.
Aspergillus fonsecaeus |
|---|
Reference
Authors
Title
Journal
Organism
|
3 [PMID:14235515]
EDSTROM RD, PHAFF HJ.
ELIMINATIVE CLEAVAGE OF PECTIN AND OF OLIGOGALACTURONIDE METHYL
ESTERS BY PECTIN TRANS-ELIMINASE.
J. Biol. Chem. 239 (1964) 2409-15.
Aspergillus fonsecaeus |
|---|
Reference
Authors
Title
Journal
Organism
|
4 [PMID:13727438]
NAGEL CW, VAUGHN RH.
The degradation of oligogalacturonides by the polygalacturonase of
Bacillus polymyxa.
Arch. Biochem. Biophys. 94 (1961) 328-32.
Bacillus polymyxa |
|---|
Reference
Authors
Title
Journal
Organism
|
5 [PMID:6035509]
Nasuno S, Starr MP.
Polygalacturonic acid trans-eliminase of Xanthomonas campestris.
Biochem. J. 104 (1967) 178-85.
Xanthomonas campestris |
|---|
Reference
Authors
Title
Journal
Organism
|
6 [PMID:9195887]
Mayans O, Scott M, Connerton I, Gravesen T, Benen J, Visser J,
Pickersgill R, Jenkins J.
Two crystal structures of pectin lyase A from Aspergillus reveal a
pH driven conformational change and striking divergence in the
substrate-binding clefts of pectin and pectate lyases.
Structure. 5 (1997) 677-89.
Aspergillus niger [GN:ang] |
|---|
| Other DBs |
ExplorEnz - The Enzyme Database: 4.2.2.2
IUBMB Enzyme Nomenclature: 4.2.2.2
ExPASy - ENZYME nomenclature database: 4.2.2.2
BRENDA, the Enzyme Database: 4.2.2.2
CAS: 9015-75-2 |
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