KEGG   Exaiptasia diaphana (Aiptasia): 110246041
Entry
110246041         CDS       T05080                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
epa  Exaiptasia diaphana (Aiptasia)
Pathway
epa03020  RNA polymerase
epa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:epa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    110246041
  09124 Replication and repair
   03420 Nucleotide excision repair
    110246041
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:epa03021]
    110246041
   03400 DNA repair and recombination proteins [BR:epa03400]
    110246041
Enzymes [BR:epa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     110246041
Transcription machinery [BR:epa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     110246041
DNA repair and recombination proteins [BR:epa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      110246041
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R EutB
Other DBs
NCBI-GeneID: 110246041
NCBI-ProteinID: XP_020907998
Position
Unknown
AA seq 1915 aa
MASVSGSPAPLKDVKRCQFGILGPDEVKQMSVTTDGGVKYAETMEGGRPKLNGLMDPRQG
TIDRFSRCQTCAGNMTECPGHFGHIELAKPVFHVGYLATTVKYLRCVCFYCSKLLVDAND
PRVKEIXSKTTTQPKKRMQHIYDLXKGKKVCEGGDEMDTTLTGNQENGEDTDKKINHGGC
GRYQPKFRKTGLDLTAEWKHVNDDSSEKKINLSAERVHEIFKRISDEECEILGMNPKYAR
PDWMVITVLPVPPLPVRPSIILSGTARSQDDLTHKLAEIVKAKNNLQRNELNGAAAHIIA
EDTRLLQYHVATLIDNEIPGLPRAMQKSGRPLKSVKQRLKSKEGRIRGNLMGKRVDFSAR
AVXTPDPVLSIDQVGVPRTIAQNLTFPEIVTPFNIDSMQELVRRGNNQYPGAKYIIRDNG
ERVDLRFHPKPSDLHLQFGYKVERHIRDNDVIIFNRQPTLHKMSMMGHRVKILPWSTFRL
NLSVTTPYNADFDGDEMNLHVPQSLEAKAEISEIMMVPRNIVTPQSNKPVMGIVQDSLTA
IRKFTKRDVFIEKDTMMNLLMWIPNWNGKIPQPAILKPKPLWTGKQVCSIFIPGQVNVIR
THSTHPDDEDSGPYKYISPGDTKVLIEHGELLSGILCKKSLGTSSGSLTHVIAMELSHEV
AREFYGTTQVVVNNWLLLEGHSIGIGDCIADSDTYDEIQKATRKAKKDVIEVIEKAHNDM
LEPTPGNTLRQTFENQVNRILNDCRDKTGSSAQKSLSEFNNFKAMVVAGSKGSKINISQV
IAVVGQQNVEGKRIPFGFRHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFLFHAMGGR
EGLIDTAVKTSETGYIQRRLIKAMEGLSIAYDGTIRNSNNQMIQLRYGDDGMDGGAIEFQ
NIATMRPSTSAFEKKFHFDLSNERRLRRYFQDDIVRDMTGSATALQELESEFSVLQDDRD
LLRRIFPTGNARVALPVNLSRLIWNAQKTFRINSRSSTDLHPLRVIEGVRDLSKKLIVVS
GEDHISKQAQFNATLLFNILLRSTLXTKRVAEEFHLTSEAFEWLLGEIETRFHYAFGKPG
EMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVSKRPKTPSLTVFLI
GQAARDAEMAKSVLCRLEHTTLRKVTANTAIYYDPDPQNTVIGEDQDFVNVYYEMPDFDV
SRISPWLLRIELDRKRMTDKKLTMEQISEKINLGFGDDLNCIFNDDNAEKLILRIRIMNN
DEGKMGDDEDVDKMDDDVFLRCIEQNMLTDMTLQGIESISKVYMNLPDEDKKKRIVITEQ
GEFKAIQEWILETDGVSLLRVLSERDVDPVRTTSNDICEIFTVLGIEAVRKSVEREMNHV
ISFDGSYVKYRHLALLCDIMTCRGHLMAITRHGINRQDVGALMRSSFEETVDVLMEAAAH
SETDHLRGVSECIILGKLPRIGTGCFDLMLDAEKCKYGMEIATNIMGPGMGGPLAGSGVF
FGAAGSPSGMSPPTTPWNVATPAYGDAWSPGMGSGMTPGAATFSPSAGSEVGGMSPGGFS
PLWSPNPQSPSSPGPSSPYIPSPATGASPGYSPASPAFMPSSPSMSPASPSYSPTSPGYS
PSSPSSGYSPASPSYSPTSPNYSPTSPSYSPSSPSYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
SPTSPSYSPTSPSYSPSSPSYSPQSPSYSPSSPKYSPTSPSYSPTSPKYSPTSPTYSPSS
PSYSPSSPKYSPTSPSYTPASPTYSPTSPSYSPSSPRYSPSSPRYTPTSPEFSPSSPKYS
PSSPNYSPTSPTYTPLSSRYSPASPKYTPASGADPSSPEYSPSSPSTLSSQYTPK
NT seq 5748 nt   +upstreamnt  +downstreamnt
atggcttcggtttctggatctccagctccmctaaaagacgtcaaaagatgccagtttggt
attttaggaccagacgaagtaaaacaaatgtctgtgactactgatggaggtgtgaagtac
gcagaaactatggaaggaggacgtccaaagctgaacggccttatggatccaaggcagggc
accattgatcgcttctcacgatgtcagacatgtgcagggaatatgactgaatgtcctggt
cattttggccatattgaactcgccaaaccagtatttcacgttggatacttggcaacaact
gttaaatacctgcgttgtgtgtgtttttactgctcaaagttgctcgttgacgcgaatgat
cccagagtgaaggagatcrtgtccaaaactaccacacaacccaagaaaagaatgcagcac
atctatgacctttgraaagggaagaargtttgtgaaggaggtgatgaaatggacacaact
ctcacgggaaaccaggaaaatggagaggacactgacaagaaaataaatcatggtggatgt
ggtcgctaccagcccaagttcagaaaaacaggcttagacctaactgctgaatggaaacat
gtcaatgatgattcaagtgagaaaaagataaatttgtcagctgagcgtgtacatgaaatc
ttcaaacgaatctctgatgaagagtgtgaaatacttggcatgaaccctaagtatgctaga
ccagattggatggtgataacagtgcttcctgtacctcctttaccagttagaccatccatt
attcttagtggcacagcaagaagccaggatgacttgacacacaagctggctgagatagtg
aaagctaaraacaacttgcaaaggaatgaactcaatggtgctgcagcacacatcattgca
gaggataccagattgctacaatatcacgtagcaaccttgattgataatgaaatccctgga
cttccaagggcaatgcaaaaatcaggtcggccactcaagtcagtcaaacagcgattaaag
agcaaagaaggacgtatcagaggaaatctaatgggaaaacgtgtagatttctcagctcgt
gctgtcatractcctgatccagtgctttctattgatcaagttggtgtccctagaaccatc
gcacagaatctaacttttccagagattgtgactccttttaacattgacagcatgcaggag
ctagtgagaagaggcaacaatcaataccctggggccaagtacatcatcagagacaatgga
gaaagagtagacttgaggtttcaccctaaaccaagtgacttacatctccagtttggatac
aaggttgaaagacatataagagataacgatgttatcatcttcaatcgtcaacctacgttg
cataaaatgtccatgatgggccatagagtgaagattctaccatggtctacttttaggctg
aatcttagtgtaacaactccatacaatgctgattttgatggagatgaaatgaacctccat
gtacctcagtccttagaagcaaaggctgagatctcagaaataatgatggtaccacggaac
attgttactccacagtccaacaaacctgtcatgggtattgtgcaagattcattgactgcc
ataagaaagtttacaaagagagatgtatttattgaaaaagacacaatgatgaatttattg
atgtggatcccaaactggaatggtaagattccrcagccagccattcttaaacccaaacca
ctgtggaccggtaaacaagtgtgcagtatcttcatacctggacaagttaacgtaatacgw
acacacagtacccaccctgatgatgaagattcrgggccttacaagtacatatcaccagga
gacaccaaggtccttattgaacatggggaacttctatctggratcctctgtaaaaagtcc
cttggtacatcatctggtagcttgactcatgttattgctatggagctgagtcatgaagta
gccagggaattctatggtaccacacaagtagtagttaataactggctattactggaaggc
catagtattggtattggtgactgtattgcagattctgatacctatgatgagattcagaag
gcaacaaggaaagctaagaaagacgtgatagaagtcattgagaaggctcacaacgacatg
ttggagccaactcctggtaatacactaagacagacatttgaaaaccaagtcaatcgtatt
ctgaatgactgtcgtgacaagactggtagcagtgcacagaaaagcttgtcagagttcaac
aattttaaggccatggtggtagctggctctaagggatcgaagattaacatttctcaggtt
attgcagtggtaggtcaacagaacgttgaaggaaagcgaatcccttttggtttccgtcat
cgtacactaccgcatttcatcaaggatgattatggtcctgaaagtagaggttttgtagag
aattcctaccttgcaggtctcacaccaacagaattcttrtttcacgctatgggtggtcgt
gagggtcttattgatacagctgtgaagaccagtgaaacaggttatattcagcgtcgtctg
atcaaggccatggaaggcttaagtattgcttatgacggtacaataagaaactctaacaac
caaatgattcagttgcgttatggagaygatggcatggatggtggtgctattgaattccaa
aacatcgcaaccatgagaccatccacttcggcttttgaaaagaaattccattttgatctt
tctaatgagagaaggttgaggaggtactttcaggatgatattgttcgtgacatgaccggc
agtgcaactgctttgcaagagctygagtctgaatttagcgtcctgcaagatgatcgagat
ttattgaggaggattttcccgacgggaaatgcgagagtagctcttccagtaaacctcagc
aggttgatatggaatgctcaaaagactttcagaataaacagccgatcatcgactgatctt
catccattacgagttattgaaggtgttcgtgatttgtctaagaaactgattgtcgtgtct
ggagaagaccacatcagtaaacaagcacagttcaatgctactctgttattcaacattctt
ctacgatcgacattgtgraccaagagagtggctgaagagttccatttgacttctgaagca
tttgaatggcttcttggggaaattgaaacaagattccattacgcctttggtaagccaggc
gagatggtgggtgctttagcagctcagtcacttggtgaaccagctactcagatgacactg
aataccttccattacgctggtgtatcggccaagaacgttacacttggagtaccacgtcta
aaggaaatcatcaatgtttcaaagagacctaaaactccttccttgactgtcttcttgatc
ggacaagcagctagagatgcagaaatggctaagtccgtactgtgccgtctagagcataca
accctacgtaaagtaacagccaatactgccatttactatgatcccgatcctcaaaacact
gtgatcggtgaagatcaagactttgttaatgtctattatgagatgcctgactttgatgtc
tcgcgaatctctccatggctgcttcgtattgaattagaccgaaaaagaatgactgacaag
aaattgaccatggagcaaatctcagaaaagattaaccttggatttggagatgatctcaat
tgtatattcaacgacgataatgcagaaaaattgattcttagaatcaggatcatgaacaat
gatgaaggcaagatgggcgatgacgaagacgttgataaaatggacgacgatgtgtttctc
cgatgtatcgaacagaacatgctgactgacatgactctacaaggtattgaatccatctct
aaggtgtacatgaacttgcctgatgaagacaagaagaaaagaattgttataacagagcag
ggcgagttcaaagccatccaggaatggattctagaaaccgatggggtcagcttacttcga
gttctcagtgagagagacgttgatcccgttcgaacaacctccaacgacatatgtgaaatc
tttacggtacttggtatcgaagcagttcgtaaatcagttgaacgagagatgaaccatgtt
atctcattcgatggttcatacgtraartatcgtcatctggctctactttgtgatattatg
acatgtagaggtcatttaatggccatcacaagacatggtatcaacaggcaggacgtcggc
gctttgatgagaagttcctttgaagaaacggttgatgtcttaatggaagccgcagcgcat
tccgagactgatcatcttcgtggtgtcagtgaatgcattattctcggaaaactaccaagg
attggaacagggtgttttgatcttatgcttgacgcagagaaatgcaaatatggcatggag
attgctactaatatcatgggacccggtatgggtggaccactggctggatctggtgtgttc
tttggtgcagcagggtcaccaagtggtatgtctccacccacaactccatggaacgtcgca
acaccagcatacggtgatgcttggagtccaggaatgggcagcgggatgacaccaggggcg
gcaacattctcaccgtctgcagggtcagaagtaggaggcatgagcccaggtggattcagt
ccattatggagtcctaatccacagtctccgtcttctcctggtccttcaagtccttacatc
ccaagtcctgcgacaggcgcaagcccaggttattcacctgccagtcctgcctttatgcca
agctcaccgtcgatgtcaccagcaagtccatcttattctccaacatcacctggctactct
ccctcttctccatcttctgggtattctccagcaagcccaagctactcaccaacctctcct
aattattctccgacatcaccgtcttatagtccgtcatctccatcgtattctccgacgtcg
ccatcgtattctccgacatcaccatcgtattccccgacgtcgccttcatattctccaact
tctccgtcttattctccaacatcgccatcgtattctccgacatcaccatcatattcgccg
acatcgccatcatattccccgacgtcaccgtcatactctccgacgtcgccgtcatattcg
ccaacttcaccttcatattctccgacatctccaagctatagtccgacgtcgccatcatat
tcgccaacttcaccttcatattctccgacatcgccgtcgtactcgccgtcttctccgagc
tactcacctcagtctccatcctactcaccgtcctctcccaaatattctccaacttcacca
agctactcacctacctctcccaagtacagtcctacctctccaacctactctccttcttct
ccatcgtattccccgtcatcccccaagtattctcctacatcaccttcctacaccccagcc
tcaccgacttattcacctacatcaccgtcttattcaccgtcgtctccacggtactcgcca
tcatcaccaaggtacaccccaacttctcctgagttctctccctcatcgccaaagtacagc
ccttcttcgccgaattattcgccaacatcgccaacatatacaccgttgtcaagtcggtac
agcccagcttcacctaagtataccccggcgtctggggctgatccttcatcgccggagtat
tcgccttcttcgccttctaccttgtcctcacaatatactcctaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (108)   
   KEGG ORTHOLOGY (1)   
   RefGene (104)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (9)   
   Pfam (9)   
All databases (131)   

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