KEGG   Exaiptasia diaphana (Aiptasia): 110246769
Entry
110246769         CDS       T05080                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 4
  KO
K10643  CCR4-NOT transcription complex subunit 4 [EC:2.3.2.27]
Organism
epa  Exaiptasia diaphana (Aiptasia)
Pathway
epa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:epa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    110246769
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:epa03000]
    110246769
   03019 Messenger RNA biogenesis [BR:epa03019]
    110246769
   04121 Ubiquitin system [BR:epa04121]
    110246769
Enzymes [BR:epa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     110246769
Transcription factors [BR:epa03000]
 Eukaryotic type
  Zinc finger
   Cys3His zinc factors
    110246769
Messenger RNA biogenesis [BR:epa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     110246769
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     110246769
Ubiquitin system [BR:epa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    110246769
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2 zf-CCCH_2 Torus RRM_occluded
Other DBs
NCBI-GeneID: 110246769
NCBI-ProteinID: XP_020909149
Position
Unknown
AA seq 617 aa
ASSQRKQKLTENRKHLANVRVVQKNLVFVVGLTQRLADSELLKRTEYFGKFGKIHKIVIN
NSTNYAGPQGPSASAYITFNKEEDAHKAILAVSNAYLDGRTLKASLGTTKYCSYFLRNIS
CPKPDCMYLHDLGDEAASFTKEEMQDGKHQEYEQELLSNYAQKMGMNTDKDSSEFWSEQT
GSSLPSESGWDSKEGESETEYSRSPHLREPSSGLDLYNQKDNDDYWEEEDWGEPEASTVP
PQITKTEHQTXIDNTQKTTNIPQTHNKPHNVGQTDTYENTTHQGWLDDVAPQVPPTNTLL
DYQPNPGLFEPGPADSFCSLGLSNLHLKVSSDDDLGFDPWNESSKGLADLLREEVTQTPS
THSQPSVYSTIPTRPSFVPQLTQHFPTNQKDDFKSWQEGFRALLPNININFAGWPTTPEG
QHQTPTEWSPASQTTIPTVNHNQAVRPPPGFEARKPEPQLPPIDDPSIVWSKAIGSKDSM
PIIPGIIPNGFSNLSSNTTDLPGAVVVQSSGMLNDNMNPSVKQFLALFDTSNDNKVNSDN
SDNSNPDNSQRKPQSIQSQWNSQAFNKKQNLSDRRTASHFQSKENGKILTKDKHVLKARE
NLKQPESNKRKVTGRLA
NT seq 1855 nt   +upstreamnt  +downstreamnt
cgcctcatcacaaaggaaacaaaaactgacagagaacagaaaacatttagctaatgtgag
agttgtacaaaaaaatttggtatttgttgttggtttaacacagagactagcagattcaga
gctgctcaaaagaacagagtattttggaaaatttggaaaaattcacaagattgtaatcaa
caatagcacaaattatgctggtccccaggggcccagtgcgagtgcatatataacattcaa
taaagaggaggatgctcataaagcgatacttgctgttagtaatgcttacctggacggacg
aactttaaaggcttcacttggaacaacaaaatattgcagttattttcttcggaatatttc
ctgtccaaaaccagactgtatgtatcttcatgaccttggtgatgaggcggcaagttttac
aaaagaagaaatgcaggatggtaaacaccaagaatacgaacaagaactgttatcaaatta
tgcacaaaaaatgggtatgaatacagataaggattctagtgaattttggtcagagcaaac
agggtcatcgctaccatcagaatctggatgggattcaaaagaaggcgaatcagaaacaga
atattccagatctcctcacttgcgagaaccctcatctggattagatctctacaatcaaaa
agataacgacgactactgggaagaagaagactggggagagcctgaagcatcgacagtacc
accacagatwaccaaaacagaacaccagacartgattgacaatacacagaaaacaactaa
tataccacagacacacaataaaccacacaacgtgggacagacagacacatatgaaaatac
cacacaccaaggttggttagacgatgtcgctccacaagtacctccaacaaatacactatt
agattatcaacctaaccctggattgtttgagcctggcccagcagacagtttctgtagtct
ggggttatcaaatcttcatttgaaagtttcatctgatgatgatttaggttttgatccttg
gaatgaatcaagcaaaggactagcagatttactacgagaagaggtcacacagacacctag
tactcattcccaaccgagtgtttattccacgataccaacaagrccktcatttgtaccaca
attaactcaacacttccctaccaaccaaaaagacgattttaaaagctggcaagagggatt
tcgagctttattaccgaatataaacatcaattttgctggctggcctactacaccggaagg
acagcatcaaacaccgacagaatggagtcccgcttcacaaacaacaataccaactgtcaa
tcataatcaagcagttcgacctccacctgggtttgaggcaagaaaaccagaaccacagct
accgcccattgatgatcctagtatcgtgtggtcaaaagctataggctccaaagactcgat
gccaattattcctggtattattcctaatggtttttctaacctctcgtccaatacaacaga
cctgcctggtgcagtggtagtccagtcctcggggatgctaaatgataatatgaatccatc
agtaaaacagttcctggcgctattcgatacaagcaacgacaacaaagttaacagcgacaa
cagcgacaacagcaaccctgacaactcacagagaaagccacaatcgatacaatctcaatg
gaattctcaagcgtttaacaaaaagcaaaacctttccgatcgcagaactgcgtcacattt
ccaatcaaaagaaaacggaaagattttaaccaaagataaacatgtattgaaagcgaggga
gaatctcaaacaaccagagtctaataagcgaaaggtgaccgggcggctcgcttga

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (45)   
   KEGG ORTHOLOGY (1)   
   RefGene (41)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (64)   

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