KEGG   Encephalitozoon romaleae: EROM_040850
Entry
EROM_040850       CDS       T03458                                 
Name
(RefSeq) Ski2 ATP-dependent RNA helicase
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
ero  Encephalitozoon romaleae
Pathway
ero03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ero00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    EROM_040850
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ero03019]
    EROM_040850
   03041 Spliceosome [BR:ero03041]
    EROM_040850
   03009 Ribosome biogenesis [BR:ero03009]
    EROM_040850
   03016 Transfer RNA biogenesis [BR:ero03016]
    EROM_040850
Enzymes [BR:ero01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     EROM_040850
Messenger RNA biogenesis [BR:ero03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     EROM_040850
Spliceosome [BR:ero03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    EROM_040850
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    EROM_040850
Ribosome biogenesis [BR:ero03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    EROM_040850
Transfer RNA biogenesis [BR:ero03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    EROM_040850
SSDB
Motif
Pfam: DSHCT DEAD ResIII Helicase_C MTR4-like_stalk ATPase_2
Other DBs
NCBI-GeneID: 20521149
NCBI-ProteinID: XP_009264350
UniProt: I6ZI13
Position
IV:complement(102266..105067)
AA seq 933 aa
MIEDKYFDILNEGLPSQDIVIPERLEKRTMVTDKVDRNGTRHEAVIPVGTAYTPLPKEFA
APSAKNYLFELDDFQKISVCSLERDESVLVSAHTSSGKTVVAEYAIAMSLKSKQRVVYTS
PIKALSNQKYRELLSEFGDVGLMTGDVTINPTATCLVMTTEILRNMLYKGGEVVREIHWI
IFDEIHYMRDKERGVVWEETIILLPRHVRMVFLSATIPNALEFAEWICHIQNQVVHVVYT
EKRVTPLVHYFRTNKLYKIKDKKFHKSSFLSAMRSIQKRAVGPREVSEAISDASLPVVVF
SFRRKDCEKFAMKLDKSYLGDSEAKMVQTIFTNAIMSLRKEDREIPIIQNILPLLMRGIG
IHHSGLLPIIKEVVEILFQEGLLKVLFATETFSIGLNMPAKSVVFTALKKFDGESMRLVS
SGEYIQMSGRAGRRGIDSMGIVISIISEPITYKEVCKLFSSSSDNLVSAFRLTYNMLLNL
MRVEGLDPLYLISRSFHHFQSYKKALAEEETLYSMHRQLENICPNGIVTLYRIREEKKVE
RNKRLSEEFSKYLKKGRVVDLFIPRNGPSITIRNAIVSKVQEKVLCMVGTDEGVYMCGFP
LYYVDCVYDSRVKLDMRVFTRSFEKITVEDELDKEIGEIESKILSIDPKWSFDFCMICGK
PSMGCLVSCSKELISKDAVMVQVPENGRNYRENPKQSRWLDTKMKGEIGEARSYFMNEIL
KQQCMDKLLELKGLKEIYHMRECKKMIEVLKKLEYCNDTSVLIKGRMACEISSGDELVLT
EMIFNGDFAGIPVEHFVPLLSCIVFEEWDSDNFVLSDENKLYYKLLSSSVEKVCGVLKSC
SIDVDPAAYLRRFSYELMDVVRMWVCGHTFVSICSRTNIFEGSIIRTFKRLEELLRQLSS
AARVIGNTELENMFALGIAKIKRDIVFANSLYI
NT seq 2802 nt   +upstreamnt  +downstreamnt
atgatcgaagacaaatacttcgatatccttaacgaaggcctaccatcgcaagacattgtt
attcccgaaagactagagaaaagaaccatggtgaccgataaggtggatagaaatggaacg
cgccatgaagctgtcatccccgttggcacggcttatactcctttgccgaaagagtttgct
gctccatcggcaaagaactacttatttgaattggacgacttccagaagatttctgtatgt
agtcttgaaagagatgaaagtgtccttgtaagtgcacatacaagttctgggaaaactgtt
gttgcagaatacgccattgcaatgtcattgaagagtaagcaaagagttgtgtacacatct
ccgatcaaagcattatctaaccagaagtacagggagcttctttccgagtttggcgatgtg
ggcctaatgacaggagatgtcaccatcaacccgacagcaacgtgccttgtgatgacgaca
gagattcttcgtaacatgctctataagggaggcgaggtggttcgtgagatccactggatt
atctttgacgagatacattatatgagagacaaagaaagaggagttgtctgggaggagacc
atcatattgcttccaaggcatgttcggatggtgtttctcagtgcaacgattccaaatgca
ttagagtttgcagaatggatatgccatatccaaaatcaggttgttcatgttgtttacacc
gagaagagggtgacacctcttgtccattacttccgcacaaataagctgtacaagatcaag
gacaagaagttccacaaatcaagttttttatctgcaatgagatcgatccagaagagagct
gtcgggccccgagaggtaagcgaagcaataagtgatgcatctcttcctgttgttgtgttt
tcattcagaagaaaggactgcgagaagtttgcgatgaagctagacaaaagctatctcggg
gactccgaagcaaagatggtacagacgatatttactaatgccatcatgtctctccgaaag
gaggatcgagagattccgattatccaaaacatccttcctcttcttatgagaggaattggg
attcatcactccgggcttcttcccataatcaaggaggttgtggagatactgtttcaggaa
gggttactgaaggtactctttgcaacagagacattttcgattgggctcaatatgcctgca
aagtctgtggtgtttactgcactgaagaaatttgatggagaatccatgaggctggtgagt
tctggagagtatattcaaatgagcggaagggcagggagaagaggaatagatagcatgggg
attgtgataagtataatatccgagcccattacctacaaagaggtttgtaagctcttttcc
tcatcctcggataatcttgtgagtgcattccgactgacatataacatgttattgaacctg
atgagggttgaaggccttgacccgttatatctgatcagtagaagcttccatcatttccaa
tcatacaagaaggctctagccgaggaggaaactttgtactcgatgcaccgacaactagaa
aacatttgccccaacgggattgtgacactgtatagaataagagaggaaaagaaggttgaa
agaaacaaaagactatctgaggaattcagcaagtatttgaagaagggaagggttgttgat
ttgtttatacctaggaatgggccatccatcacaataaggaatgcgatagtcagcaaggtc
caggagaaggtcctttgcatggttgggactgatgaaggagtgtacatgtgtgggtttccc
ttgtactacgttgactgtgtatacgatagtagagtgaagttagatatgagagtgtttact
cggagctttgagaagattacagttgaagatgagttagacaaggagataggagagatagag
tctaaaatattgtccatagatcctaagtggagttttgacttctgtatgatatgcggaaag
ccctccatgggatgcttagtctcgtgcagtaaggagttgattagtaaagatgcagttatg
gtccaagttcctgagaacggaaggaattacagggagaatcccaagcagtcgagatggtta
gatacaaagatgaaaggtgagataggagaagcaaggtcgtacttcatgaatgagatactg
aagcagcaatgtatggataaacttcttgagctcaaaggccttaaagagatttatcacatg
agagaatgcaagaaaatgatcgaggttttgaagaagcttgaatactgcaacgacactagc
gtacttataaagggaagaatggcatgtgagatttcatctggtgacgagcttgttcttacg
gaaatgatattcaatggagactttgcaggaattccagtggagcactttgttccattgctg
tcatgcattgtatttgaggaatgggactccgataactttgtcttgagtgacgaaaacaag
ctatattacaaattgctgtcttcctctgtagagaaggtttgtggtgttctgaagtcatgt
tctattgatgtagatcctgcagcatatctcagaaggttttcttatgagctgatggatgtt
gttcggatgtgggtgtgtggacatacgtttgtcagtatctgtagccggacaaatatattt
gagggaagtatcatcaggacgtttaagaggcttgaggagcttcttaggcaattgagtagc
gcagccagagtcataggcaacactgaattggagaacatgtttgcattgggaatagcaaag
atcaagagagacatagtctttgctaactctctttatatttag

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (21)   

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