KEGG   Sinorhizobium sojae: SJ05684_c11670
Entry
SJ05684_c11670    CDS       T05052                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
esj  Sinorhizobium sojae
Pathway
esj03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:esj00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SJ05684_c11670
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:esj03021]
    SJ05684_c11670
   03400 DNA repair and recombination proteins [BR:esj03400]
    SJ05684_c11670
Enzymes [BR:esj01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SJ05684_c11670
Transcription machinery [BR:esj03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SJ05684_c11670
DNA repair and recombination proteins [BR:esj03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SJ05684_c11670
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid RnfC_N
Other DBs
NCBI-ProteinID: ASY62623
UniProt: A0A249P9L3
Position
1136152..1140357
AA seq 1401 aa
MNQEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIATLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMLAVDEFGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRAEMAETTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDMGELHHALE
TKAVTLHAKIRGRYKSVDAEGNPVSKIYETTPGRMIIGELLPKNPNIPFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDDNGRQKPMNSIYM
MSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVTHTDCGTEKGLTMTAIVDAGQVVASLGQRILGRTA
LDNIDNPVTGERIVDAGKMILEADVIEIEKAGIQSVRIRSALTCEIQTGVCGVCYGRDLA
RGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRNM
LRNSDGVLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYTR
PMMTEVEGTVHFEDVVDGISVLESTDESTGITKRQVIDWRSTPRGTDLKPAIVIKDKNGN
IAKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTVRFGRDYKNKRRVLIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEI
TDAGDSTYIVGDNVDRIELEDVNDALIEEGKKPAFGEPVLLGITKASLQTPSFISAASFQ
ETTKVLTEAAVAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRKG
TGADAATPMLADMADENAAAE
NT seq 4206 nt   +upstreamnt  +downstreamnt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaccttcgattcc
atccggatttcgatcgcgtcgccggagaagattctctcctggtcttacggtgagatcaag
aaaccggagacgatcaactaccggaccttcaagccggagcgcgacgggctgttctgcgcc
cgcatctttggcccgatcaaggactatgaatgcttgtgcggcaagtacaagcgtatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgc
gagcgaatgggccatatcgagctcgcagcacccgttgcgcacatctggttcctgaagtcg
ctgccgagccgcatcgcgacgctgctcgacatgacgctgaaggatatcgagcgcgttctc
tacttcgagaactacatcgtcaccgagccgggcctgacctcgctcaaggaaaaccagctc
ctgtcggaagaagagtatatgctcgccgtcgacgagttcggtgaagaccagttcaccgcg
atgatcggcgccgaagcgatctacgagatgctcgcttcgatgaatctcgaaaagatcgcc
ggcgacctgcgtgcggaaatggccgaaacgacgtccgatctgaagcagaagaagctgatg
aagcggctgaagatcgtcgagaacttcatggaatccggcaaccgtccggaatggatgatc
atgaaggtcgttcccgtgattccgccggacctgcgcccgctggttccgctcgacggcggc
cggttcgcgacctccgacctgaacgacctttaccgccgtgtcatcaaccgtaacaaccgt
ctgaagcggctgatcgagctgcgcgcgccggggatcatcatccgcaacgaaaagcgcatg
ctgcaggaatcggtcgatgcgctgttcgacaacggccgtcgcggccgcgtcatcaccggt
gccaacaagcgcccgctgaagtcgctctccgacatgctgaagggcaagcagggccgcttc
cgccagaacctgctcggaaagcgcgtcgactattccggccgctcggtcatcgtgaccggc
ccggagctgaagctgcatcaatgcggcctgccgaagaagatggcgctcgagctcttcaag
ccgttcatctacgcccgcctcgacgcgaagggctactcctcgaccgtcaagcaggcgaag
aagctggtggaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgtgcgccgacgctgcaccgccttggcatccaggccttcgaa
ccgatcctggtggaaggcaaggcgatccagttgcacccgctcgtctgcacggccttcaac
gccgacttcgatggcgaccagatggccgttcacgtgccgctgtcgctcgaagcccagctc
gaagcccgcgtgctgatgatgtcgacgaacaacatcctgcatccggcaaacggtgcaccg
atcatcgttccgtcgcaggacatggttctcggtctctactatctctcgatcttgaaccag
aacgagccgggcgaaggcatggccttctccgacatgggtgaactgcaccacgcgctggag
accaaggccgtcaccctgcacgccaagatccgcggccgctacaagagcgtcgacgccgag
ggcaacccggtttcgaagatctatgaaacgacgccaggccgcatgatcatcggtgagttg
ctgccgaagaacccgaacattccgttcgacatctgcaatcaggagatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccactgcggccagaaggacacggtcatcttc
tgcgaccggatcatgcagctcggcttctcgcatgcctgccgcgccggtatttcgttcggc
aaggacgacatggtgatcccggacaccaaggtgaagatcgtcggcgataccgaagcgctc
gtgaaggaatacgagcagcagtacaatgacggtctcatcacccagggcgagaagtacaac
aaggtcgtcgacgcctggggcaaggcgaccgagaaggtcgccgaagagatgatggcgcgc
atcaaggcggtcgagttcgacgataacggccgtcagaagccgatgaactcgatctacatg
atgtcgcactcgggtgctcgtggttctccgaaccagatgcgccagctcggcggcatgcgc
ggcctgatggcgaagccgtcgggtgagatcatcgaaacgccgatcatctcgaacttcaag
gaaggcctgaccgtgaacgagtacttcaactcgacccacggcgcccgcaagggactggcg
gacaccgctttgaagaccgcgaactccggttacctcacgcgtcgtctcgtcgacgtggcg
caggactgcatcgtgacccacacggattgcggtaccgaaaagggcctcaccatgacggcg
atcgtcgatgccggtcaggtcgtggcgtcgctcggccagcgtatccttggccgcacggcg
cttgacaacatcgacaacccggtcaccggcgagcgcatcgtcgatgccggcaagatgatc
ttggaagccgatgtcatcgagatcgagaaggccggcatccagtccgtccgtattcgctcg
gctctgacctgcgaaatccagaccggtgtctgcggcgtctgctacggccgcgacctggct
cgcggtacgccggttaatatgggcgaggccgtcggtgtcatcgcggcgcagtcgatcggc
gagcccggcacgcagctcaccatgcgtaccttccacctgggtggtacggcgaccgtggtc
gaccagtcgttcctggaagcctcctatgaaggtacggttcagatcaagaaccgcaacatg
ttgcgcaattccgatggcgtactcgtcgccatgggccgcaacatggcgatccagatcctg
gatgagcgtggtgtcgagcgttcctcgcagcgcgtcgcctatggttcgaagatcttcgtc
gacgatggcgacaaggtgaagcgcggccagcgcctcgccgagtgggacccctacacccgt
ccgatgatgacggaagtggaaggtaccgttcacttcgaagacgtggtcgacggcatctca
gttctggaatcgaccgacgagtcgaccggcatcaccaagcgccaggtcatcgactggcgc
tcgacgccgcgcggtacggacctgaagcccgcaatcgtcatcaaggacaagaacggcaac
attgccaagcttgcccgcggcggcgaggcccgcttcatgctctcggtcgacgcgatcctg
tccgtcgagccggggcagaaggttagccagggtgacgttcttgcgcgttcgccgctcgaa
agcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaggca
cgtcgtccgaaggatcacgccatcatcgccgaaatcgacggtactgttcgcttcggtcgc
gactacaagaacaagcgacgcgtgctgatcgagccggcggaggacggtgtagagccggtc
gaatacctgatcccgaagggcaagcccttccatcttcaggacggcgactacatcgaaaag
ggcgactacatcctcgacggcaacccggcgccgcacgacatcctggcgatcaagggcgtg
gaagcgctcgcttcctacctcgtcaacgagatccaagaagtctatcgactgcagggcgtt
gtcatcaacgacaagcacatcgaggtcatcgtccggcagatgctgcagaaggtcgaaatc
accgacgccggtgactcgacctatatcgtcggcgacaatgtcgaccgcatcgagctcgag
gacgtcaatgatgcgctgatcgaggaaggcaagaagcccgccttcggcgagccggtcctg
ctcggcatcaccaaggcatcgttgcagacgccgtccttcatctcggctgcttcgttccag
gaaaccaccaaggtcctgaccgaagccgcagttgccggcaagacggacggcctgcagggc
ctcaaggagaacgtcatcgtcggccgtctgatcccggccggtacgggcggtacgatgacg
cagatccgccgcatcgcgacggcgcgtgacgagctcatcctcgaagagcgtcgcaaaggc
acgggcgcggatgccgcgaccccgatgctcgccgatatggcggacgagaacgccgcggcc
gagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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